PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0003s0280.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ZF-HD
Protein Properties Length: 347aa    MW: 38987.6 Da    PI: 8.2381
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0003s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.99e-32108163359
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          +vrY+eClkNhAas+G+++vDGCgEfmp  g+eg+ +alkCaAC+CHRnFHRre e 
  Kalax.0003s0280.1.p 108 GVRYRECLKNHAASMGTNVVDGCGEFMPG-GKEGSLEALKCAACQCHRNFHRRELEG 163
                          79**************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-20103162IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.3E-29109161IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-29110160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.731111160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.8E-30232303IPR009057Homeodomain-like
SuperFamilySSF466892.21E-18237303IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-28242299IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEQYQQQQHN QIRLSQHHTT TPSPPRNLPP PPPLAYPPSS IEQPPRTHTS LHDRDPEVED  60
KKNGVLLLSA PSAGMYGGGG GELQSPESLK LSPVGTRSKP VKSASPSGVR YRECLKNHAA  120
SMGTNVVDGC GEFMPGGKEG SLEALKCAAC QCHRNFHRRE LEGHESGSSN FARSVIVHPL  180
HLPPPTQIPL HHHHHPHHPH HHQIVQPVAV AYGGGATESS SEDLVQALDE MPQREAEPGS  240
VRKRFRTKFT QEQKDKMLGF AERLGWRLQR QDDEVVERFC SEVGVRRQVL KVWMHNNKNS  300
FKKPPDEDQQ QQQTHNHPPT THPQIQLQPQ HHHLLHLHQQ KQQETL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-272433001875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022951673.16e-78zinc-finger homeodomain protein 2-like
SwissprotO647227e-66ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A2N9GME91e-72A0A2N9GME9_FAGSY; Uncharacterized protein
STRINGcassava4.1_022551m2e-73(Manihot esculenta)
STRINGXP_010102085.11e-72(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-56homeobox protein 31
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]