PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0003s0234.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HSF | ||||||||
Protein Properties | Length: 497aa MW: 54600.6 Da PI: 4.6694 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.7 | 4.5e-34 | 39 | 129 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k++++++d++++ +isws+++nsfvv+d+ ef +LpkyFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k Kalax.0003s0234.1.p 39 FLSKTFDMVDDPSTDAIISWSSSNNSFVVWDPPEFGV-LLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQK 118 9***********************************9.***************************999.........************* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 +ll++i r+k Kalax.0003s0234.1.p 119 HLLKTISRRKP 129 ********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.4E-37 | 30 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.4E-60 | 35 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.54E-33 | 35 | 127 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 9.5E-20 | 39 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 8.0E-30 | 39 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.5E-20 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 77 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.5E-20 | 89 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MDRSKAENGG AAPISAKPEA AAPPPTPAPT SNSNAPPPFL SKTFDMVDDP STDAIISWSS 60 SNNSFVVWDP PEFGVLLPKY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL 120 LKTISRRKPP HGQNRPHTQQ SQNPNSACVE VGKFGLEEEV ERLKRDKNVL MQELVRLRQQ 180 QQSTDNQLQT MVNRIHGMEQ RQQQMMSFLA KVVRSPGFLA QFVQQQAESK RITGGNKKRR 240 TKPEHISKNE ASSSDGQIVK YQSYANGTTK AMLRQLWDID GSSQSDSFNN KPDSFPVDGI 300 LFPNMPNKEN SANPISGAVL QDASEISEKP AALGAPECKA NVGGGKDQPT PAGSVSEVAT 360 NQPSKTLGSL FGTQDITQVS HPQSDVIMDE FPPFLDMAPE NITDITDDEL LLDPPSIEAD 420 GAFPPLDIDS ISIVDSFFNE DEELWDMLNE KSEGTDAASD SAPTVNKNNS QPAEAERMDS 480 LTEQMGLFSS DPKTTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-25 | 10 | 127 | 10 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-25 | 10 | 127 | 10 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-25 | 10 | 127 | 10 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 242 | NKKRRTKP |
2 | 236 | 241 | KKRRTK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021300342.1 | 1e-158 | heat stress transcription factor A-1d-like | ||||
Refseq | XP_021300348.1 | 1e-158 | heat stress transcription factor A-1d-like | ||||
Refseq | XP_021300353.1 | 1e-158 | heat stress transcription factor A-1d-like | ||||
Swissprot | Q40152 | 1e-138 | HSF8_SOLLC; Heat shock factor protein HSF8 | ||||
TrEMBL | A0A2P2N0I1 | 1e-162 | A0A2P2N0I1_RHIMU; Heat stress transcription factor A-1d isoform X1 | ||||
STRING | VIT_02s0012g01810.t01 | 1e-157 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 1e-92 | heat shock transcription factor A1D |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0003s0234.1.p |
Publications ? help Back to Top | |||
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