PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0003s0191.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 221aa MW: 25472.4 Da PI: 6.9425 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.7e-17 | 19 | 65 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W eEd++l ++v ++G ++W+ Ia++ g++R++k+c++rw++yl Kalax.0003s0191.1.p 19 AAWKLEEDQKLEEYVLKHGAKRWNQIAEKTGLNRSGKSCRLRWLNYL 65 58*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5.2e-16 | 71 | 116 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++l+ +++k+lG++ W++Ia +++ gRt++++k++w+ +l Kalax.0003s0191.1.p 71 RGNMSEDEEDLIQRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNLHL 116 899*******************.*********.***********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.99 | 13 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-14 | 17 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.53E-28 | 18 | 112 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.9E-16 | 19 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-10 | 20 | 65 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-23 | 20 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.137 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 71 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 72 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.59E-10 | 73 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAAGKTRGSS YKELVTSRAA WKLEEDQKLE EYVLKHGAKR WNQIAEKTGL NRSGKSCRLR 60 WLNYLKPGIK RGNMSEDEED LIQRLHKLLG NRWSLIAGRL PGRTDNEIKN YWNLHLKKRV 120 LGEMETNNIP SKHKQTSRTS YYEKEPTTSG HNNHECHAGN PNANQIDDEC QAGNLNANQI 180 NEADNCFDWS PHISDCSEWV NRLLDLDVEQ WLQEDMDILN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 17 | 120 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates the production of a signal that induces hair (trichome) precursor cells on leaf primordia to differentiate. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020534293.1 | 2e-60 | transcription factor TT2 | ||||
Swissprot | Q947R4 | 1e-48 | GL1_ARALY; Trichome differentiation protein GL1 | ||||
TrEMBL | A0A1Q3BY67 | 3e-61 | A0A1Q3BY67_CEPFO; Myb_DNA-binding domain-containing protein | ||||
STRING | XP_008356551.1 | 4e-59 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-50 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0003s0191.1.p |