PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0003s0151.9.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 201aa MW: 22632.9 Da PI: 9.1379

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0003s0151.9.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	215.1	2.2e-66	10	168	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhC++l svn+a a q + + ++l+++ ++l + + +++ + + ++s+ t+ Kalax.0003s0151.9.p 10 FPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCSNLWSVNMAAAFQSVLSWQDLHQH---HQLPNYLNGGQDNRIDHLGSSSKITN 96 589***************************************99998877777665433...34444444444444444444444444 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + ++++ v+rPPek+qrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl Kalax.0003s0151.9.p 97 KMT--MRVPVQKSIE-ERAVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGL 168 444..3334444444.3579***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.5E-70	11	168	IPR006780	YABBY protein
SuperFamily	SSF47095	8.9E-8	109	161	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.0E-4	117	160	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MGSSCVEVVF PEQLCYIPCN FCNIVLAVSV PCSSLFDIVT VRCGHCSNLW SVNMAAAFQS 60 VLSWQDLHQH HQLPNYLNGG QDNRIDHLGS SSKITNKMTM RVPVQKSIEE RAVNRPPEKK 120 QRVPSAYNQF IKEEIQRIKA NNPDITHREA FSTAAKNWAH FPHIHFGLML ETNNNNLPTR 180 FDQNNAGKRL MSKAAGLMKK *

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006450896.1	9e-97	axial regulator YABBY 5 isoform X2
Refseq	XP_006475869.1	9e-97	axial regulator YABBY 5 isoform X2
Swissprot	Q8GW46	9e-79	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A067GY39	2e-95	A0A067GY39_CITSI; Uncharacterized protein
TrEMBL	A0A1Q3CQH7	2e-95	A0A1Q3CQH7_CEPFO; YABBY domain-containing protein
TrEMBL	V4UP20	2e-95	V4UP20_9ROSI; Uncharacterized protein
STRING	VIT_11s0016g05590.t01	3e-94	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-81	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kalax.0003s0151.9.p

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]