PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0003s0151.12.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | YABBY | ||||||||
Protein Properties | Length: 205aa MW: 23137.5 Da PI: 9.1379 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 217.5 | 4.2e-67 | 10 | 171 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhC++l svn+a a q + + ++l+++ + ++l + + +++ + + ++s+ t Kalax.0003s0151.12.p 10 FPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCSNLWSVNMAAAFQSVLSWQDLHQHHQFTQLPNYLNGGQDNRIDHLGSSSKIT 98 589********************************************999999999999888888888888888888877777776666 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ +++ ++++ v+rPPek+qrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl Kalax.0003s0151.12.p 99 NKMTMR--VPVQKSIE-ERAVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGL 171 666644..44444444.4579*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.4E-70 | 11 | 171 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 9.16E-8 | 112 | 164 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.1E-4 | 118 | 165 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MGSSCVEVVF PEQLCYIPCN FCNIVLAVSV PCSSLFDIVT VRCGHCSNLW SVNMAAAFQS 60 VLSWQDLHQH HQFTQLPNYL NGGQDNRIDH LGSSSKITNK MTMRVPVQKS IEERAVNRPP 120 EKKQRVPSAY NQFIKEEIQR IKANNPDITH REAFSTAAKN WAHFPHIHFG LMLETNNNNL 180 PTRFDQQNNA GKRLMSKAAG LMKK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450896.1 | 3e-95 | axial regulator YABBY 5 isoform X2 | ||||
Refseq | XP_006475869.1 | 3e-95 | axial regulator YABBY 5 isoform X2 | ||||
Swissprot | Q8GW46 | 4e-78 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1Q3CQH7 | 4e-95 | A0A1Q3CQH7_CEPFO; YABBY domain-containing protein | ||||
STRING | VIT_11s0016g05590.t01 | 2e-93 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-80 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0003s0151.12.p |
Publications ? help Back to Top | |||
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