PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0003s0100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 394aa MW: 45137.4 Da PI: 5.667 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 169 | 215 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd llv++v ++G + W+ Ia+ ++ gR +kqc++rw+++l Kalax.0003s0100.1.p 169 KGQWTHEEDMLLVQLVDRYGIRKWSIIAQLLP-GRIGKQCRERWHNHL 215 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 59.9 | 5.4e-19 | 221 | 263 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT eEd++l++a+++lG++ W+ Ia++++ gRt++++k++w+ Kalax.0003s0100.1.p 221 KDAWTREEDKILIEAHEELGNK-WAEIANRLP-GRTENSIKNHWN 263 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.505 | 164 | 219 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.1E-31 | 166 | 262 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-14 | 168 | 217 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-16 | 169 | 215 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 170 | 220 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.68E-14 | 172 | 215 | No hit | No description |
SMART | SM00717 | 1.2E-17 | 220 | 268 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.345 | 220 | 270 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.7E-17 | 221 | 263 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 221 | 269 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.21E-14 | 223 | 266 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MDQFGAAKYE EAHPTHQMFV SDTLSKLPTA DGFPFEAVLL LPDNNFLDDN HQPNHQNFNT 60 WASVDKSFGL CQVSYLDPFD PYALESHQTG LSCEMLDRPA NKFYYDYIED IKPLNYVVPD 120 EFSCVTTNVD FTRYSADSNT AQESMIRVTS SVSSARKGPC KGKQSNVIKG QWTHEEDMLL 180 VQLVDRYGIR KWSIIAQLLP GRIGKQCRER WHNHLRANIK KDAWTREEDK ILIEAHEELG 240 NKWAEIANRL PGRTENSIKN HWNATKRKEY AKLKRRTKNP KPSSLLQEYI KSLKLGNNSS 300 LTGKQAGRSR KSSTNRRTIK KENELPPSGQ EQQVLVSVCD EFCPSDRLVP DYSDFGNVLP 360 DFDFDGSLFE ESNIESLLED MDIVVDCARD DNEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 7e-44 | 167 | 269 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 7e-44 | 167 | 269 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023929442.1 | 6e-93 | transcription factor MYB98-like | ||||
TrEMBL | A0A2N9HX41 | 8e-92 | A0A2N9HX41_FAGSY; Uncharacterized protein | ||||
STRING | EMJ12343 | 1e-90 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 2e-78 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0003s0100.1.p |