PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0003s0052.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 675aa MW: 73899.6 Da PI: 5.2997 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 287.1 | 4.9e-88 | 309 | 672 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn........sseelaalklf 84 +++++ Ae vs g+l laq +Larl+++ sp g+p+qR+a yf+e L+ l+ +++ + +++ +ts+ + +l a+k f Kalax.0003s0052.1.p 309 QQIFKSAELVSMGNLVLAQGILARLNHQLSPIGKPLQRVAYYFKESLQLLLHMISNN-LDVISSATTSTALssfspplsLILKLGAFKSF 397 7899********************************************998873333.3333333333222345577777888889999* PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel 172 s++sP+++f+++t NqaIleave ++r+H+iDf+i++G+QW++L+q+La R+ +g sl+iT++ + el t+e+L+ fAeel Kalax.0003s0052.1.p 398 SDISPVVQFANFTSNQAILEAVEMHDRIHVIDFEIGYGGQWASLMQELALRNssGGVISLKITAFIL--CYDDLELGLTRENLSLFAEEL 485 ****************************************************767778********9..4499***************** PP GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 +++++ +++ l++l+ + v++gE+++ nl + +++ +sl+ vL+++k+lsPk+vv e+ +d+ + +F++ +++a+e Kalax.0003s0052.1.p 486 NIDLDLKIF---GLDMLNSVSHYVSNGEVVVMNLPIGIFSNC--ALSLPF----VLRIIKQLSPKIVVTLERGCDRYDLPFAHNVIQAVE 566 ********8...99999999999*************999887..556666....************************************ PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352 ys l +slea +se+ +k+Er++++++i+++v ++ + + + Wr+ + ++GF+p++ls+++++q ++l+++++++g+++e Kalax.0003s0052.1.p 567 SYSNLVESLEAV-NGNSEAFQKIERFMIHPAIEKLVLQRFRI----QDKSPPWRSVFISSGFTPLQLSNFTESQGECLVQRTPVQGFHLE 651 *********987.7899*******************987665....8889**************************************** PP GRAS 353 eesgslvlgWkdrpLvsvSaW 373 +++ slvl+W++++L+s++aW Kalax.0003s0052.1.p 652 KKQSSLVLCWQQKELISATAW 672 ********************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.398 | 281 | 653 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-85 | 309 | 672 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence Send to blast |
MPLPFDIQGK QQQQQHLGFL PQDLIATEEQ LQWSNIKAED AGLSQYAARE PTSVLDARRS 60 PSPPYSSSTL SSSLGSSASG GAPTPVASQE PCGGGGGGAR NNNLDFDQSM FGFILNDNSN 120 AHIDDPAGLS KLISAEPVMP SDLDSLGAIY HPSQHQSGDE FGAFSGNLQE SGFGSGQGSI 180 FGQFGNSLVA SSDIESLFSQ QQHQTIESLI NHHQHQQPPQ NPSLFLPSGF TDQPIFYLPN 240 PKRLNTGPAL NSDHHQQQNQ IEKNPFLAQN QLQRQVSMMP ASAASSKMIL QPSGRIEEMG 300 MHQQAALFQQ IFKSAELVSM GNLVLAQGIL ARLNHQLSPI GKPLQRVAYY FKESLQLLLH 360 MISNNLDVIS SATTSTALSS FSPPLSLILK LGAFKSFSDI SPVVQFANFT SNQAILEAVE 420 MHDRIHVIDF EIGYGGQWAS LMQELALRNS SGGVISLKIT AFILCYDDLE LGLTRENLSL 480 FAEELNIDLD LKIFGLDMLN SVSHYVSNGE VVVMNLPIGI FSNCALSLPF VLRIIKQLSP 540 KIVVTLERGC DRYDLPFAHN VIQAVESYSN LVESLEAVNG NSEAFQKIER FMIHPAIEKL 600 VLQRFRIQDK SPPWRSVFIS SGFTPLQLSN FTESQGECLV QRTPVQGFHL EKKQSSLVLC 660 WQQKELISAT AWGC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-28 | 313 | 672 | 25 | 378 | Protein SCARECROW |
5b3h_A | 1e-28 | 313 | 672 | 24 | 377 | Protein SCARECROW |
5b3h_D | 1e-28 | 313 | 672 | 24 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010661679.1 | 1e-170 | PREDICTED: scarecrow-like protein 27 | ||||
Swissprot | O81316 | 1e-122 | SCL6_ARATH; Scarecrow-like protein 6 | ||||
TrEMBL | A0A438GXI9 | 1e-169 | A0A438GXI9_VITVI; Scarecrow-like protein 6 | ||||
STRING | VIT_15s0048g00270.t01 | 1e-169 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-121 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0003s0052.1.p |
Publications ? help Back to Top | |||
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