PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0002s0316.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ZF-HD
Protein Properties Length: 186aa    MW: 20295.1 Da    PI: 8.9601
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0002s0316.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer31.34.9e-1010471355
          ZF-HD_dimer 13 hAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRr 55
                          Aa+ G  + DGC+ ++p++g        +C  CgCHR FH r
  Kalax.0002s0316.1.p 10 RAAQHGLVVRDGCRQYVPEPGM-----PNRCFVCGCHRHFHQR 47
                         69****************9665.....58************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.6E-61147IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.7E-7100154IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MTDAVTGTGR AAQHGLVVRD GCRQYVPEPG MPNRCFVCGC HRHFHQRCVF LGMPSNPPPP  60
PPQEPPTPPP PQRQPRPLNV VRPVEVHARE GNGEPQPFRR FTSDQLASME LLAEEINWDI  120
SRLKMNNDEL AEACHPIGVT VTQFKRWVRV QKRKRRIGIG GRNEAGASGT ATGSGGCHPA  180
ATDSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-