PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0002s0305.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 220aa MW: 24028.4 Da PI: 5.5908 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.8 | 2.2e-55 | 29 | 131 | 1 | 100 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtd Kalax.0002s0305.1.p 29 QLQMFWTYQrqeIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTD 118 89*****998899***************************************************************************** PP NF-YC 88 ifdflvdivprde 100 ifdflvdivpr+e Kalax.0002s0305.1.p 119 IFDFLVDIVPRSE 131 **********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.18E-34 | 8 | 123 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-20 | 51 | 114 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.0E-37 | 52 | 129 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MDNNPPPAPP LPQQQPAPLQ HLLQQQQQQL QMFWTYQRQE IEHVNDFKNH QLPLARIKKI 60 MKADEDVRMI SAEAPILFAK ACELFILELT IRSWLHAEEN KRRTLQKNDI AAAITRTDIF 120 DFLVDIVPRS EDDPSATAAA GLPLPLPLPM PGTASGVPFY YPPVVQPAAA GMMTIGRPAA 180 AIDPSAAGVY SQPWQSVWAH PTADGGSGGQ GRNLDGAQS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-54 | 37 | 129 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 101 | 107 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009618952.1 | 4e-90 | PREDICTED: nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_016475903.1 | 4e-90 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9FMV5 | 4e-86 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A1S4AHJ9 | 9e-89 | A0A1S4AHJ9_TOBAC; nuclear transcription factor Y subunit C-1-like | ||||
STRING | XP_009618952.1 | 2e-89 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G63470.2 | 1e-84 | nuclear factor Y, subunit C4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0002s0305.1.p |