PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0002s0302.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 361aa MW: 40471.9 Da PI: 7.8938 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.5 | 2.9e-41 | 89 | 165 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v++C++dls++++yhrrhkvCevhsk+p+v+++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ Kalax.0002s0302.1.p 89 CLVDDCKSDLSNCRDYHRRHKVCEVHSKTPEVTIQGRKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQP 165 9*************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.2E-33 | 81 | 150 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.855 | 86 | 163 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.62E-38 | 87 | 168 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.4E-30 | 89 | 162 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MDWSSSKGPS WDWPELEQQQ QHSFPANNID IGSGSFSVDL NLGSVIGSSQ TQLGISRSPL 60 PLPSKRARAA AANSSASAVG QQQAATAYCL VDDCKSDLSN CRDYHRRHKV CEVHSKTPEV 120 TIQGRKQRFC QQCSRFHALE EFDEGKRSCR KRLDGHNRRR RKPQPETHLQ QGTYLPNFPG 180 AGMLSFSNPS SHTHSLSSLI SPTGWSGSIN KIEDPYNKQP HLNLLEKQNS VTDYSPSRYR 240 EAQRLTFLQG KHQMNHPEPS DHQVFYDGLA TQAPDSDCAL SLLSRPMLPM HTEINFRNAI 300 PLQPHHHHHA VLPSRQPAGH FSTLQPTVPG SDVNFHDMFQ TGPDESNVKN EPQTLPFYWE 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-28 | 89 | 162 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 162 | KRSCRKRLDGHNRRRRKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 3e-48 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0002s0302.1.p |