PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0002s0298.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family G2-like
Protein Properties Length: 424aa    MW: 45041.7 Da    PI: 6.9692
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0002s0298.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like833.2e-26163216156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k +++WtpeLH+rFv+aveqLG  ekA+P++ile+m+ +gLt+++++SHLQkYR++
  Kalax.0002s0298.1.p 163 KVKVDWTPELHKRFVQAVEQLG--EKAVPSRILEIMGTEGLTRHNIASHLQKYRSH 216
                          5689*****************4..88****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.477160218IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-25161219IPR009057Homeodomain-like
SuperFamilySSF466899.14E-15162219IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-25163216IPR006447Myb domain, plants
PfamPF002493.0E-10166214IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MQMLVASSSS LRDTATKSDD NPETIESAGM DEFSDCFSAG SLLDSIDFDE LFAGLDGDPY  60
SLPDLEILGD YSISGGTGDD RGQTSDDGND AVSGSASGSP FRSGSGLDAG SVCSPGEGVV  120
DKAGGMDVKK DGPEGHFGKV KKSAASAGKA GLSKARGSDG NRKVKVDWTP ELHKRFVQAV  180
EQLGEKAVPS RILEIMGTEG LTRHNIASHL QKYRSHRKHL IAREAEAASW NQRRHMYGGA  240
RGGGMGKRVA VSPWLLPTIG FPPAMSGPVH HHHPTVRPLH VWGHPSGDPS QTNTMWPKHI  300
LPHQLRPPHL QPRPVWAPPH LPYGQSQGMP CYPPPPQRFM APPVPGIPHH AMYKTDPRAA  360
AAGPATILHP PLDSSPSNES IDAALEDVLA KPWLPLPIGL KAPAIDTVVG ELQRQGVPQI  420
PPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-15168218657Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132777.11e-113hypothetical protein PHAVU_011G124200g
TrEMBLV7AKX51e-112V7AKX5_PHAVU; Uncharacterized protein
STRINGXP_007132777.11e-113(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-59GBF's pro-rich region-interacting factor 1