PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0002s0249.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 541aa    MW: 60496.8 Da    PI: 7.2625
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0002s0249.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS431.46.7e-1321705401374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++ Ll+cA a+s+++  +aq l+a+l++++s +g+p+qRl ay++e+L a+ ++ +s++y+ l+++e +   ss+ ++++++++ev+P+
  Kalax.0002s0249.1.p 170 LRQGLLDCALAISEDNRPKAQYLIAELEQMVSVSGEPIQRLGAYVLEGLIAKFNSAGSSIYEVLRCKEPA---SSDLFSYMHILYEVCPY 256
                          5788*****************************************************************9...99*************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +kf+++ aN aI ea++ e+rvHiiDf+i+qG QW++L++a+a+Rp+gpp++RiTg++++ s   +   le++g+rL+k+Ae+ +vpf+f
  Kalax.0002s0249.1.p 257 FKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWLTLIRAFAARPGGPPHIRITGIDDSISAyaRGGGLETVGKRLSKLAESYKVPFKF 346
                          ***********************************************************877788999********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++ ++++  + +  +L + pgEalaVn+++ lh+l+desvs++++rd++L+lvk+lsPkvv++veqe+++n++ F+ rfle+++yy+a+f
  Kalax.0002s0249.1.p 347 HA-ASRSDCESQHVNLGITPGEALAVNFAFILHHLPDESVSTHNHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFLETMNYYTAMF 435
                          **.67777777899**************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++a+lpr++++ri vE+++l++++vn++acegaer++rhe l+kW++r+ +aGF+p+pls+ +++++k+ll++++++ y++ee++g+l
  Kalax.0002s0249.1.p 436 ESIDATLPRNHKDRIHVEQHCLAKDVVNIIACEGAERVKRHELLGKWKSRFAMAGFRPYPLSSLVNATIKTLLENYSDK-YKLEERDGAL 524
                          *****************************************************************************55.********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          +lgW++r+Lv  +aW+
  Kalax.0002s0249.1.p 525 YLGWMNRALVGSCAWT 540
                          ***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.791144521IPR005202Transcription factor GRAS
PfamPF035142.3E-129170540IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MSKRLYPKSM PEAHAYLLPQ FHQLDHQLYC NDSNPSARFM IQNPNGRVLI PTANGRYCTL  60
ESSSATIRSN NSTLSLINGS PLSQQDCSSY PLDQPRVSEK SYGSPASSSC ITDDKHQLRN  120
KLMELETVML GPDYDVSDKY TGIFHDRSGV ASPEIDSWRQ MMEITSKKDL RQGLLDCALA  180
ISEDNRPKAQ YLIAELEQMV SVSGEPIQRL GAYVLEGLIA KFNSAGSSIY EVLRCKEPAS  240
SDLFSYMHIL YEVCPYFKFG YMSANGAIAE AMKDEDRVHI IDFQIGQGSQ WLTLIRAFAA  300
RPGGPPHIRI TGIDDSISAY ARGGGLETVG KRLSKLAESY KVPFKFHAAS RSDCESQHVN  360
LGITPGEALA VNFAFILHHL PDESVSTHNH RDRLLRLVKG LSPKVVTLVE QESNTNTAAF  420
FPRFLETMNY YTAMFESIDA TLPRNHKDRI HVEQHCLAKD VVNIIACEGA ERVKRHELLG  480
KWKSRFAMAG FRPYPLSSLV NATIKTLLEN YSDKYKLEER DGALYLGWMN RALVGSCAWT  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-5917754026379Protein SCARECROW
5b3h_A4e-5917754025378Protein SCARECROW
5b3h_D4e-5917754025378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021675700.10.0scarecrow-like transcription factor PAT1
RefseqXP_021675701.10.0scarecrow-like transcription factor PAT1
RefseqXP_021675702.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2C9UQQ00.0A0A2C9UQQ0_MANES; Uncharacterized protein
STRINGcassava4.1_004951m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]