PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0002s0239.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CO-like
Protein Properties Length: 397aa    MW: 43932.1 Da    PI: 4.808
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0002s0239.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72.1e-07434535
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                         kC+ +++++   +C++++ +lC dC ++ H 
  Kalax.0002s0239.1.p  4 KCDFCGNQRSVVYCRSDDACLCLDCDTSVHT 34
                         7***************************994 PP
2zf-B_box247.8e-084789541
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                         +C++++++++ l C + ++ lC++C  ++H g       H++++
  Kalax.0002s0239.1.p 47 VCQRCNSQPAVLQCIEERVSLCQSCDWAGH-GastsaaaHKRRN 89
                         8*****************************.5588888888765 PP
3CCT58.32.6e-20339382144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R +a+lRYkeK+k RkFeK++rY sRK++A+ R+RvKGrFvk+ 
  Kalax.0002s0239.1.p 339 RTKAVLRYKEKKKMRKFEKTVRYVSRKERADVRKRVKGRFVKAG 382
                          889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.186147IPR000315B-box-type zinc finger
SMARTSM003361.8E-9447IPR000315B-box-type zinc finger
CDDcd000211.11E-8435No hitNo description
PROSITE profilePS501198.8024390IPR000315B-box-type zinc finger
CDDcd000214.59E-44788No hitNo description
SMARTSM003360.534890IPR000315B-box-type zinc finger
PROSITE profilePS5101714.703339381IPR010402CCT domain
PfamPF062033.9E-15339381IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MGYKCDFCGN QRSVVYCRSD DACLCLDCDT SVHTANSLSR RHWRTLVCQR CNSQPAVLQC  60
IEERVSLCQS CDWAGHGAST SAAAHKRRNI KFYSDCPSAA ELQAIWSFES EGFLGSVSIG  120
EQEMGLLSIT EKNVKQSEPL STEVNQLCNI NPDEVWNSSA QDMDSLFPDE RLETEVANSP  180
QPKVSFSGAI NPTEDDDLFA NFGMDESELN LENYEELFRV NLSQSEELLE NGGIDSLFEP  240
TNKSLAELDC LETLVSQKVA SAAQPGCSKA LSVDSMMTSR TEPVIHCKLR QSSSTLSFSG  300
LAGDGGGDFL DCGTSSMISI GEQPWCQSFQ ESPSPSANRT KAVLRYKEKK KMRKFEKTVR  360
YVSRKERADV RKRVKGRFVK AGETYDYDPL TLTKSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303586.11e-147PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-116COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2P5B6171e-143A0A2P5B617_PARAD; Zinc finger-domain containing protein
STRINGXP_004303586.11e-146(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.43e-85CONSTANS-like 9