PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0002s0190.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ZF-HD | ||||||||
Protein Properties | Length: 300aa MW: 32868.2 Da PI: 8.6928 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 86.9 | 2e-27 | 90 | 144 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +v+Y+eClkNhAa + +++vDGCgEfmp g+eg+ +alkCaAC+CHRnFH re e Kalax.0002s0190.1.p 90 GVHYRECLKNHAAIMETNVVDGCGEFMPG-GKEGSLEALKCAACQCHRNFHCRELE 144 699*************************9.999*******************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.0E-24 | 91 | 143 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-16 | 91 | 144 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.1E-25 | 92 | 142 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.254 | 93 | 142 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 204 | 275 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.46E-12 | 209 | 275 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.4E-25 | 214 | 271 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MILDHKILLG NLPPPPPLAY PPSSTIEQPP RTNTSLHNHD AEVEDKKNGV LLLSAPSAGG 60 GGGQLQSPES SKLSPVGTRS KPVKSASPSG VHYRECLKNH AAIMETNVVD GCGEFMPGGK 120 EGSLEALKCA ACQCHRNFHC RELESGSSNL FAWSVIGLHL YPPIQIPLHH HHHQIVQPVA 180 VAYGGGATES SSEDLVQALD KMPQREAEPG SVRNRFGTKF TQEQKDKMLG FAERLGWRLQ 240 RQDDDQVVER FCSEVGVRRQ ALKMWMHNNK NSFKKPSRRR SAAANTQPPS HTTHPQIQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-24 | 215 | 272 | 19 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022951673.1 | 1e-62 | zinc-finger homeodomain protein 2-like | ||||
Refseq | XP_023538082.1 | 2e-62 | zinc-finger homeodomain protein 2-like | ||||
TrEMBL | W9S6C3 | 3e-60 | W9S6C3_9ROSA; Uncharacterized protein | ||||
STRING | XP_010539899.1 | 2e-61 | (Tarenaya hassleriana) | ||||
STRING | XP_010102085.1 | 6e-61 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 3e-47 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0002s0190.1.p |