PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0002s0143.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 371aa    MW: 41804 Da    PI: 6.7988
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0002s0143.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092933282055
                          HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +k +yps++e+  LA+++gL+ +q+ +WF N+R ++
  Kalax.0002s0143.3.p 293 YKWPYPSETEKMALAESTGLDHKQINNWFINQRKRH 328
                          5679*****************************885 PP
2ELK31.15.3e-11248269122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK +L++KYsgyL+sLkqE+s
  Kalax.0002s0143.3.p 248 ELKLHLMKKYSGYLSSLKQELS 269
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.5E-19101145IPR005540KNOX1
PfamPF037901.2E-20102144IPR005540KNOX1
SMARTSM012561.6E-25153204IPR005541KNOX2
PfamPF037913.8E-23157202IPR005541KNOX2
PROSITE profilePS5121310.964248268IPR005539ELK domain
SMARTSM011889.2E-6248269IPR005539ELK domain
PfamPF037899.6E-8248269IPR005539ELK domain
PROSITE profilePS5007113.005268331IPR001356Homeobox domain
SuperFamilySSF466891.54E-19269342IPR009057Homeodomain-like
SMARTSM003892.4E-11270335IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-27273332IPR009057Homeodomain-like
CDDcd000869.25E-12280332No hitNo description
PfamPF059203.4E-16288327IPR008422Homeobox KN domain
PROSITE patternPS000270306329IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MLLLSGEIMS SRFPRVFHIS ISRSTSANAG PVAGPGAGSS SAFRHQYFQS DHHDSGVKRE  60
LAVTTSQFLG QQLHQNPIGI IRENGGIERD DDQCPESDDA AAIKAKIMSH PQCSNLLEAY  120
MDCQKVGAPP QVVAQLVAAR EEFEKQQGSS SSSGKDISRD PELDQFMEAY YDMLLKYREE  180
LTRPLQEAMD FMRRIESQLN MLGASPIRAY NPSDEKSSDG VGSSEEEGDN GGVTDQLPKI  240
DPRAEDRELK LHLMKKYSGY LSSLKQELSK KRKKGKLPKE ARQKLLAWWE LHYKWPYPSE  300
TEKMALAEST GLDHKQINNW FINQRKRHWK PSEDIQFMVM DGMHHQNASA LYMHGGHYMG  360
PDHCSYRTGP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263272LKQELSKKRK
2269273KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2406610.0EU240661.1 Kalanchoe x houghtonii knotted-like homeobox protein (KN5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027093057.11e-142homeotic protein knotted-1-like
RefseqXP_027150634.11e-142homeotic protein knotted-1
SwissprotO041351e-138KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLB1P1S10.0B1P1S1_9MAGN; Knotted-like homeobox protein
STRINGXP_006472353.11e-141(Citrus sinensis)
STRINGXP_006433688.11e-141(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-101KNOTTED-like from Arabidopsis thaliana