PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0002s0143.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | TALE | ||||||||
Protein Properties | Length: 370aa MW: 41716.9 Da PI: 6.7988 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.2e-09 | 292 | 327 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+ +q+ +WF N+R ++ Kalax.0002s0143.2.p 292 YKWPYPSETEKMALAESTGLDHKQINNWFINQRKRH 327 5679*****************************885 PP | |||||||
2 | ELK | 31.1 | 5.3e-11 | 247 | 268 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++KYsgyL+sLkqE+s Kalax.0002s0143.2.p 247 ELKLHLMKKYSGYLSSLKQELS 268 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 8.5E-19 | 100 | 144 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.2E-20 | 101 | 143 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.6E-25 | 152 | 203 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.8E-23 | 156 | 201 | IPR005541 | KNOX2 |
Pfam | PF03789 | 9.5E-8 | 247 | 268 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.964 | 247 | 267 | IPR005539 | ELK domain |
SMART | SM01188 | 9.2E-6 | 247 | 268 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.005 | 267 | 330 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.54E-19 | 268 | 341 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.4E-11 | 269 | 334 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 272 | 331 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.18E-12 | 279 | 331 | No hit | No description |
Pfam | PF05920 | 3.4E-16 | 287 | 326 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 305 | 328 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MLLLSGEIMS SRFPRVFHIS IRSTSANAGP VAGPGAGSSS AFRHQYFQSD HHDSGVKREL 60 AVTTSQFLGQ QLHQNPIGII RENGGIERDD DQCPESDDAA AIKAKIMSHP QCSNLLEAYM 120 DCQKVGAPPQ VVAQLVAARE EFEKQQGSSS SSGKDISRDP ELDQFMEAYY DMLLKYREEL 180 TRPLQEAMDF MRRIESQLNM LGASPIRAYN PSDEKSSDGV GSSEEEGDNG GVTDQLPKID 240 PRAEDRELKL HLMKKYSGYL SSLKQELSKK RKKGKLPKEA RQKLLAWWEL HYKWPYPSET 300 EKMALAESTG LDHKQINNWF INQRKRHWKP SEDIQFMVMD GMHHQNASAL YMHGGHYMGP 360 DHCSYRTGP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 262 | 271 | LKQELSKKRK |
2 | 268 | 272 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU240661 | 0.0 | EU240661.1 Kalanchoe x houghtonii knotted-like homeobox protein (KN5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027093057.1 | 1e-142 | homeotic protein knotted-1-like | ||||
Refseq | XP_027150634.1 | 1e-142 | homeotic protein knotted-1 | ||||
Swissprot | O04135 | 1e-138 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | B1P1S1 | 0.0 | B1P1S1_9MAGN; Knotted-like homeobox protein | ||||
STRING | XP_006472353.1 | 1e-141 | (Citrus sinensis) | ||||
STRING | XP_006433688.1 | 1e-141 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-101 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0002s0143.2.p |