PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0002s0143.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 387aa    MW: 43496.5 Da    PI: 6.5145
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0002s0143.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-093093442055
                          HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +k +yps++e+  LA+++gL+ +q+ +WF N+R ++
  Kalax.0002s0143.1.p 309 YKWPYPSETEKMALAESTGLDHKQINNWFINQRKRH 344
                          5679*****************************885 PP
2ELK315.6e-11264285122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK +L++KYsgyL+sLkqE+s
  Kalax.0002s0143.1.p 264 ELKLHLMKKYSGYLSSLKQELS 285
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.5E-19117161IPR005540KNOX1
PfamPF037901.3E-20118160IPR005540KNOX1
SMARTSM012561.6E-25169220IPR005541KNOX2
PfamPF037914.0E-23173218IPR005541KNOX2
PROSITE profilePS5121310.964264284IPR005539ELK domain
SMARTSM011889.2E-6264285IPR005539ELK domain
PfamPF037891.0E-7264285IPR005539ELK domain
PROSITE profilePS5007113.005284347IPR001356Homeobox domain
SuperFamilySSF466891.67E-19285358IPR009057Homeodomain-like
SMARTSM003892.4E-11286351IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-27289348IPR009057Homeodomain-like
CDDcd000861.06E-11296348No hitNo description
PfamPF059203.6E-16304343IPR008422Homeobox KN domain
PROSITE patternPS000270322345IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEEYNNQLRE NNTSPRANFL YANSVSAVST STYGIPSSRS TSANAGPVAG PGAGSSSAFR  60
HQYFQSDHHD SGVKRELAVT TSQFLGQQLH QNPIGIIREN GGIERDDDQC PESDDAAAIK  120
AKIMSHPQCS NLLEAYMDCQ KVGAPPQVVA QLVAAREEFE KQQGSSSSSG KDISRDPELD  180
QFMEAYYDML LKYREELTRP LQEAMDFMRR IESQLNMLGA SPIRAYNPSD EKSSDGVGSS  240
EEEGDNGGVT DQLPKIDPRA EDRELKLHLM KKYSGYLSSL KQELSKKRKK GKLPKEARQK  300
LLAWWELHYK WPYPSETEKM ALAESTGLDH KQINNWFINQ RKRHWKPSED IQFMVMDGMH  360
HQNASALYMH GGHYMGPDHC SYRTGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279288LKQELSKKRK
2285289KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2406610.0EU240661.1 Kalanchoe x houghtonii knotted-like homeobox protein (KN5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027093057.11e-152homeotic protein knotted-1-like
RefseqXP_027150634.11e-152homeotic protein knotted-1
SwissprotO041351e-142KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLB1P1S10.0B1P1S1_9MAGN; Knotted-like homeobox protein
STRINGGorai.009G223200.11e-150(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-102KNOTTED-like from Arabidopsis thaliana