PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0002s0086.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | G2-like | ||||||||
Protein Properties | Length: 305aa MW: 33357.1 Da PI: 7.0233 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.3 | 7.3e-33 | 45 | 99 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl Kalax.0002s0086.2.p 45 KPRLRWTADLHERFVDAVGQLGGPNKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 99 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.099 | 42 | 102 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-31 | 42 | 100 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.5E-24 | 45 | 100 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 2.15E-16 | 45 | 101 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-7 | 47 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.8E-15 | 140 | 184 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MFPLLMQPHD GGLTPLGHGR DDIHGIGVCS YGVGDPCLVL TSDPKPRLRW TADLHERFVD 60 AVGQLGGPNK ATPKAIMRTM GVKGLTLFHL KSHLQKYRLG KQSGKDMCDI VKDGSYLIEV 120 PESNNSAPKL LTPDTNEGFE VKEALRAQME VQSKLHLQVE AEKHLQIRQD AERRYMAMLD 180 RACRMLADHY VGGAVIDADK DKSQCMDAKK LPSMSFFTHD TVPSYTLQPS TTAGLHGLEE 240 LLPGLHTQRA DCSTESCLTS HDSSAGSRKR MLHADSVAQY LLWGEANMAM PNVSVSQGIA 300 GYST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-18 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-18 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-18 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-18 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008224659.1 | 1e-127 | PREDICTED: myb family transcription factor APL-like isoform X1 | ||||
TrEMBL | M5WGF6 | 1e-125 | M5WGF6_PRUPE; Myb family transcription factor APL | ||||
STRING | XP_008224659.1 | 1e-127 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 5e-65 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0002s0086.2.p |