PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0002s0086.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 308aa MW: 33719.5 Da PI: 6.7452

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0002s0086.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.4	8.9e-30	45	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGse...kAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av qLGG++ +AtPk+i+++m+vkgLtl h+kSHLQkYRl Kalax.0002s0086.1.p 45 KPRLRWTADLHERFVDAVGQLGGPNiftEATPKAIMRTMGVKGLTLFHLKSHLQKYRL 102 79*******************965558**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-28	42	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-15	45	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-20	45	103	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-7	47	101	IPR001005	SANT/Myb domain
Pfam	PF14379	3.9E-15	143	187	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MFPLLMQPHD GGLTPLGHGR DDIHGIGVCS YGVGDPCLVL TSDPKPRLRW TADLHERFVD 60 AVGQLGGPNI FTEATPKAIM RTMGVKGLTL FHLKSHLQKY RLGKQSGKDM CDIVKDGSYL 120 IEVPESNNSA PKLLTPDTNE GFEVKEALRA QMEVQSKLHL QVEAEKHLQI RQDAERRYMA 180 MLDRACRMLA DHYVGGAVID ADKDKSQCMD AKKLPSMSFF THDTVPSYTL QPSTTAGLHG 240 LEELLPGLHT QRADCSTESC LTSHDSSAGS RKRMLHADSV AQYLLWGEAN MAMPNVSVSQ 300 GIAGYST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-16	45	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	45	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	45	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	45	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008224659.1	1e-125	PREDICTED: myb family transcription factor APL-like isoform X1
TrEMBL	M5WGF6	1e-122	M5WGF6_PRUPE; Myb family transcription factor APL
STRING	XP_008224659.1	1e-124	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	4e-62	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0002s0086.1.p