PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0002s0056.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Dof
Protein Properties Length: 243aa    MW: 25893.3 Da    PI: 6.7005
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0002s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof115.62e-362482361
               zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                         ++ l+cprC+s ntkfCyynny+lsqPr++CkaCrryWt+GG+lrn+PvGg++rk+ k+
  Kalax.0002s0056.1.p 24 QTPLPCPRCESLNTKFCYYNNYNLSQPRHYCKACRRYWTQGGSLRNIPVGGATRKHSKR 82
                         56789**************************************************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-23281IPR003851Zinc finger, Dof-type
PfamPF027013.0E-322681IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5372781IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102965IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MPTEDSLPNR AARFGPAASG ASNQTPLPCP RCESLNTKFC YYNNYNLSQP RHYCKACRRY  60
WTQGGSLRNI PVGGATRKHS KRYRHPAATS TSHHSPASNS TSAASSPTRV SPGQPQLAIT  120
DDPTAKRHGE HRQQVAEEED ERVWSGVNLD LNEADCSFSS LLNENGHRSS GYGFGFGLGL  180
MPGNDDFGFG GVGDGSVNAP SGLVNPCAGT ETWQIGSGRV DVGDCFGWAD LPISTSSNDL  240
VD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3541491e-41AK354149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1005F20.
GenBankAK3609341e-41AK360934.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128K17.
GenBankAK3770581e-41AK377058.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3146P05.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66940.12e-32Dof family protein