PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0001s0280.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SBP

Protein Properties

Length: 456aa MW: 50204.6 Da PI: 8.7131

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0001s0280.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.8	2.1e-40	172	249	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls keyhr+h++Ce hsk p+v+v gle+rfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+++ Kalax.0001s0280.2.p 172 RCQVEGCNLDLSGSKEYHRKHRICESHSKYPKVTVGGLERRFCQQCSRFHDLSEFDEKKRSCRKRLSDHNARRRKPRS 249 6**************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.9E-33	165	234	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.12	170	247	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-37	171	251	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.2E-32	173	246	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MWDTRSSLQF DWENLVLLDT KGVEVPSKLN SSVWGNDQDG AERHSQTCDF RSISGFFGSD 60 AAHVSSISSK STSVDSPSLG KTSIISAFNE SRSTSIAVEF AKPKETAASS MSLEASVGSV 120 EPMIGLKLGK RTYFEDFCSG SNAKILSVSD KPLSSEYTRR SRSSHQTMQS LRCQVEGCNL 180 DLSGSKEYHR KHRICESHSK YPKVTVGGLE RRFCQQCSRF HDLSEFDEKK RSCRKRLSDH 240 NARRRKPRSE TSRFNLDGRL QVGFFLNTST YLQARPALSP WDTCGSKFTL TRDYSPSSKS 300 RATGSDHHQY LLGNGISNTV SMLSYSNDGS PTKSSTFKVL DYGVEECTAP ANRVAAQDPR 360 SALSLLSSNG SGSCNSDPVP VYHHPNNNVL QQQSVIHGVL QSASLVSPQP WGIGQRPSDS 420 PTPRADYLSS DSYHLSQYKL WNGNFGPGFG DNQLH*

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MWDTRSSLQF DWENLVLLDT KGVEVPSKLN SSVWGNDQDG AERHSQTCDF RSISGFFGSD  60
AAHVSSISSK STSVDSPSLG KTSIISAFNE SRSTSIAVEF AKPKETAASS MSLEASVGSV  120
EPMIGLKLGK RTYFEDFCSG SNAKILSVSD KPLSSEYTRR SRSSHQTMQS LRCQVEGCNL  180
DLSGSKEYHR KHRICESHSK YPKVTVGGLE RRFCQQCSRF HDLSEFDEKK RSCRKRLSDH  240
NARRRKPRSE TSRFNLDGRL QVGFFLNTST YLQARPALSP WDTCGSKFTL TRDYSPSSKS  300
RATGSDHHQY LLGNGISNTV SMLSYSNDGS PTKSSTFKVL DYGVEECTAP ANRVAAQDPR  360
SALSLLSSNG SGSCNSDPVP VYHHPNNNVL QQQSVIHGVL QSASLVSPQP WGIGQRPSDS  420
PTPRADYLSS DSYHLSQYKL WNGNFGPGFG DNQLH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-26	173	246	11	84	squamosa promoter binding protein-like 4

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	245	KKRSCRKRLSDHNARRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	4e-61	squamosa promoter binding protein-like 2

Link Out ? help Back to Top
Phytozome	Kalax.0001s0280.2.p