PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0001s0277.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

CAMTA

Protein Properties

Length: 917aa MW: 101790 Da PI: 5.9466

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0001s0277.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	148.7	1.5e-46	12	127	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 +e + rwlk+ e++ i++n e +l ++++++p+sg+++Lyn++++r+fr DG++w+kk+dg+tv E+he+LKv++ve+l+cyYa++een Kalax.0001s0277.1.p 12 REaEVRWLKPAEVYYIIQNCEDRHLRSKSAKKPPSGTFFLYNKRVLRNFRGDGHNWRKKRDGRTVGEAHERLKVDNVEALNCYYARGEEN 101 55589***************999************************************************************* PP CG-1 92 ptfqrrcywlLeeelekivlvhylev 117 ++f+rr++w+L e+++ivlv+yl+v Kalax.0001s0277.1.p 102 SSFRRRSFWMLSGERSHIVLVQYLDV 127 *********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	63.325	7	133	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.9E-52	10	128	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.1E-40	14	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	8.0E-11	365	453	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	4.62E-18	367	451	IPR014756	Immunoglobulin E-set
Pfam	PF01833	3.3E-7	368	450	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	1.0E-14	566	661	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.947	567	659	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.26E-16	571	661	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.30E-15	572	659	No hit	No description
Pfam	PF12796	9.2E-7	587	660	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.938	600	632	IPR002110	Ankyrin repeat
SMART	SM00248	0.0014	600	635	IPR002110	Ankyrin repeat
SMART	SM00248	3800	639	668	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	4.78E-8	714	822	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	11	717	739	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.895	718	747	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.12	773	795	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.608	774	803	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.007	776	794	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0014	796	818	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.974	798	823	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	7.3E-5	799	818	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence Send to blast
MQSEFDINEL VREAEVRWLK PAEVYYIIQN CEDRHLRSKS AKKPPSGTFF LYNKRVLRNF 60 RGDGHNWRKK RDGRTVGEAH ERLKVDNVEA LNCYYARGEE NSSFRRRSFW MLSGERSHIV 120 LVQYLDVANQ SPGSVSQPSF LLSPPSSLSP GISSATNQEF VSVSGGYDSN INLPSPVSAE 180 IGFEVGISNN MVEVNQASGH LEKQLSLNYE NLNGINSLSS PEGMLNSSNF EGYGMEIASQ 240 VWLDSLLDGS DYAACDGGYA GLQNGFNSLL HEAGDSGMGR QQTSGRDEDC VSWTDVANFG 300 EDEQISLELH EMFPLNTDRF EGPPFSSFTS SQQRNLGYQG KYFETDQTLI QPQANSNLFI 360 DQNQKFTICD VSPEWGYSFE TTKVIIVGSF LCHPSEHVWT CMFGDIEVPV EIIQEGVILC 420 EAPPNPSGKL TLCVTSGNRE TCSEVREFEY RNKTGICAQC SASKKETTMS SEELLLLVRL 480 AQMLLCDYSL GQRGGDSKEL GNGLSEKRNS DEDSWSLILE SLLVGSGTFA GTLYWLLEEF 540 LKEKLVRWIS SKTQEPTGES TCLLSRKEQG IIHMIAGLGY EWALAPILSS GVGINFRDIN 600 GWTALHWAAR FGREKMVACL IASGALAGAL TDPNVQDPTG ITAASIAAIN GHKGLAGYLS 660 EVALTSHLSS LKLQESELSK ELAVSEAEHT VNCIAEANMN TTEDQLSLND TLTAVRNAAS 720 AAARIQAAFR AHSFRKRQQE KASKTISIDD YGISSDVQVL SAVSKLAFRN TRDHNSAALS 780 IQKKYRGYKG RKEFLDFRQK VVKIQAHVRG HQTRKNYKVC WAAGILEKII LRWLRKGVGL 840 RGFKPELETI DESDEEDFAK VFRKKNVEAA LEEAVARVLS MVASPEARQQ YRRMLERYRQ 900 AKAHLGNAAN ESLQHL*

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence Send to blast

MQSEFDINEL VREAEVRWLK PAEVYYIIQN CEDRHLRSKS AKKPPSGTFF LYNKRVLRNF  60
RGDGHNWRKK RDGRTVGEAH ERLKVDNVEA LNCYYARGEE NSSFRRRSFW MLSGERSHIV  120
LVQYLDVANQ SPGSVSQPSF LLSPPSSLSP GISSATNQEF VSVSGGYDSN INLPSPVSAE  180
IGFEVGISNN MVEVNQASGH LEKQLSLNYE NLNGINSLSS PEGMLNSSNF EGYGMEIASQ  240
VWLDSLLDGS DYAACDGGYA GLQNGFNSLL HEAGDSGMGR QQTSGRDEDC VSWTDVANFG  300
EDEQISLELH EMFPLNTDRF EGPPFSSFTS SQQRNLGYQG KYFETDQTLI QPQANSNLFI  360
DQNQKFTICD VSPEWGYSFE TTKVIIVGSF LCHPSEHVWT CMFGDIEVPV EIIQEGVILC  420
EAPPNPSGKL TLCVTSGNRE TCSEVREFEY RNKTGICAQC SASKKETTMS SEELLLLVRL  480
AQMLLCDYSL GQRGGDSKEL GNGLSEKRNS DEDSWSLILE SLLVGSGTFA GTLYWLLEEF  540
LKEKLVRWIS SKTQEPTGES TCLLSRKEQG IIHMIAGLGY EWALAPILSS GVGINFRDIN  600
GWTALHWAAR FGREKMVACL IASGALAGAL TDPNVQDPTG ITAASIAAIN GHKGLAGYLS  660
EVALTSHLSS LKLQESELSK ELAVSEAEHT VNCIAEANMN TTEDQLSLND TLTAVRNAAS  720
AAARIQAAFR AHSFRKRQQE KASKTISIDD YGISSDVQVL SAVSKLAFRN TRDHNSAALS  780
IQKKYRGYKG RKEFLDFRQK VVKIQAHVRG HQTRKNYKVC WAAGILEKII LRWLRKGVGL  840
RGFKPELETI DESDEEDFAK VFRKKNVEAA LEEAVARVLS MVASPEARQQ YRRMLERYRQ  900
AKAHLGNAAN ESLQHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022725126.1	0.0	calmodulin-binding transcription activator 4-like isoform X3
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	D7TB03	0.0	D7TB03_VITVI; Uncharacterized protein
STRING	VIT_01s0010g03850.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Kalax.0001s0277.1.p

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]