PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0001s0272.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 214aa MW: 24106.8 Da PI: 8.3687

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0001s0272.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102	3.4e-32	129	187	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+++r ++d+ vv++tYeg H h+ Kalax.0001s0272.1.p 129 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQIQRVSKDEGVVITTYEGFHSHP 187 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.7E-33	114	188	IPR003657	WRKY domain
SuperFamily	SSF118290	7.06E-29	121	188	IPR003657	WRKY domain
PROSITE profile	PS50811	29.539	124	189	IPR003657	WRKY domain
SMART	SM00774	1.7E-37	129	188	IPR003657	WRKY domain
Pfam	PF03106	3.1E-26	130	187	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MFMAFDQISN SASSRHVSLA SIIPVSASES QLFKSHMTTS SMLAPGLMEQ QQQQERGVKR 60 PSLDESSDNN CENNNESGCI DAQSCDSVVG MKQQISNAAA TSDQGVEKEE KKKKKHRYAF 120 QTRSHVDILD DGYRWRKYGQ KAVKNNKFPR SYYRCTHQGC NVKKQIQRVS KDEGVVITTY 180 EGFHSHPTIQ NSSDNFEHIL TQMNIYNNNC SPL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-27	119	186	7	74	Probable WRKY transcription factor 4
2lex_A	1e-27	119	186	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249071.1	9e-60	PREDICTED: probable WRKY transcription factor 75
TrEMBL	A0A1U7ZM87	2e-58	A0A1U7ZM87_NELNU; probable WRKY transcription factor 75
STRING	XP_010249071.1	4e-59	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	1e-52	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	Kalax.0001s0272.1.p