PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0001s0201.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 679aa MW: 76334.1 Da PI: 6.5591

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0001s0201.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.8	1.7e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelv++yL++k++g+k++l +vi+evd+yk+ePwdLp k + +++ ew+fFs+rd+ky++g+r+nratk+gyWkatgk Kalax.0001s0201.1.p 6 LPPGFRFHPTDEELVSYYLNRKINGRKIDL-DVIPEVDLYKCEPWDLPgKsLLPSKDMEWFFFSPRDRKYPNGSRTNRATKAGYWKATGK 94 79**************************.9************6435566888**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v+s + ++vg+kktLv+y+grap+g++tdWvmheyrl Kalax.0001s0201.1.p 95 DRKVTS-QMREVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 **.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-63	3	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.277	6	157	IPR003441	NAC domain
Pfam	PF02365	1.1E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MSAVSLPPGF RFHPTDEELV SYYLNRKING RKIDLDVIPE VDLYKCEPWD LPGKSLLPSK 60 DMEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS QMREVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECRP SSNGLQDAYA LCRIFKKTAM GPKMDDNNAC SATASSALIQ 180 GYSSGQEQIQ GHHNNAYASI YHQQHHFDHY YSDNNMGGLA ASSSTSNLER HLAAPSTNDA 240 MDKNWMQFLS EDALDLTNSY PSFPSKVDIA LECARMQHRF SMPPLEVEDL TPDDMTTIAT 300 TTTHNNNNNN SNEVGLLQGI LSVAQVQQDI MAENNNHNEC NNMARAWGGS GSHYSIHDTN 360 DFTFNTNHQA HNNDSSFRSC YNENSSDAAD IKCIGITGES EEERQVTDRR MVENLRWVGM 420 SNKHLEMNSV EEHKVIPIES ISNFQRSNLH QDDPHVGHGY QSDQLSDYTG LDDTEFNSFA 480 LSLTNNGSNF FDESHADEFP NYSAATEGVD KIEVTHGLFI ASRQMANTFF HQIVPSTTVQ 540 VQLNPAMDNH SYHQVAPKLN TGTTSAHFTS YPVMGHCSAL KRTGKIIINV MAILLVCYSM 600 SKKSAMMHCN VKYPLTSDKC CALLSKEREE SSRCRATTMA KRTWSIQDYM GGSISNRVAS 660 RVWACITIAL ALCTFLVL*

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MSAVSLPPGF RFHPTDEELV SYYLNRKING RKIDLDVIPE VDLYKCEPWD LPGKSLLPSK  60
DMEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS QMREVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECRP SSNGLQDAYA LCRIFKKTAM GPKMDDNNAC SATASSALIQ  180
GYSSGQEQIQ GHHNNAYASI YHQQHHFDHY YSDNNMGGLA ASSSTSNLER HLAAPSTNDA  240
MDKNWMQFLS EDALDLTNSY PSFPSKVDIA LECARMQHRF SMPPLEVEDL TPDDMTTIAT  300
TTTHNNNNNN SNEVGLLQGI LSVAQVQQDI MAENNNHNEC NNMARAWGGS GSHYSIHDTN  360
DFTFNTNHQA HNNDSSFRSC YNENSSDAAD IKCIGITGES EEERQVTDRR MVENLRWVGM  420
SNKHLEMNSV EEHKVIPIES ISNFQRSNLH QDDPHVGHGY QSDQLSDYTG LDDTEFNSFA  480
LSLTNNGSNF FDESHADEFP NYSAATEGVD KIEVTHGLFI ASRQMANTFF HQIVPSTTVQ  540
VQLNPAMDNH SYHQVAPKLN TGTTSAHFTS YPVMGHCSAL KRTGKIIINV MAILLVCYSM  600
SKKSAMMHCN VKYPLTSDKC CALLSKEREE SSRCRATTMA KRTWSIQDYM GGSISNRVAS  660
RVWACITIAL ALCTFLVL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-59	1	163	15	174	NAC domain-containing protein 19
3swm_B	1e-59	1	163	15	174	NAC domain-containing protein 19
3swm_C	1e-59	1	163	15	174	NAC domain-containing protein 19
3swm_D	1e-59	1	163	15	174	NAC domain-containing protein 19
3swp_A	1e-59	1	163	15	174	NAC domain-containing protein 19
3swp_B	1e-59	1	163	15	174	NAC domain-containing protein 19
3swp_C	1e-59	1	163	15	174	NAC domain-containing protein 19
3swp_D	1e-59	1	163	15	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	A4VCM0	1e-101	NAC45_ARATH; NAC domain-containing protein 45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-140	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	Kalax.0001s0201.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]