PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0001s0191.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 716aa    MW: 79099.9 Da    PI: 8.1836
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0001s0191.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-172777656
                         S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         ++t++q++ Le++F+++ +p++++ ++++++l+L+ rq+k+WFqN+R+++k
  Kalax.0001s0191.1.p 27 RHTPQQIQYLETFFKECAHPDEKQQKQISSQLRLDPRQIKFWFQNKRTQMK 77
                         689*********************************************999 PP
2START117.61.7e-372214423206
                          HHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
                START   3 aeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                          a  a++el+k   +++p+W+      s+n+d + + f + +        + e +++s  vd  +  lv+ lld +  W   ++     a 
  Kalax.0001s0191.1.p 221 AVGAMDELLKVLRSDKPLWTNNNgrYSLNRDCYEKVFLRPNHykrnisAKLESSKDSCDVDISAIVLVNMLLDPS-MWLDLFPtlvtNAR 309
                          66799***************999987788888877777766688899999**************99999999999.88888888888*** PP

                          EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
                START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                          tl v+++g      g l+l    + alsplv+ R+f+f+Ry++q + ++wvi+dvS   ++++  +  v  + +lpSg++i++++ ghsk
  Kalax.0001s0191.1.p 310 TLHVVQTGmpgnrsGSLHLNHEIMHALSPLVApREFYFLRYCQQVEIDTWVIADVSYGIPREND-ENLVSNCLKLPSGCIIQDMPAGHSK 398
                          *******************************99******************************9.79999******************** PP

                          EEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 164 vtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          vtwve v+++++   h  +r +v sgl++ga +w atl++ ce+
  Kalax.0001s0191.1.p 399 VTWVELVEVNDKAStHRFYRDIVTSGLVFGAERWIATLKQMCER 442
                          *********999888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-161373IPR009057Homeodomain-like
SuperFamilySSF466891.63E-161685IPR009057Homeodomain-like
PROSITE profilePS5007115.5321979IPR001356Homeobox domain
SMARTSM003892.0E-132183IPR001356Homeobox domain
CDDcd000861.07E-142779No hitNo description
PfamPF000463.7E-152777IPR001356Homeobox domain
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PROSITE profilePS5084838.693210445IPR002913START domain
SuperFamilySSF559611.65E-25212442No hitNo description
CDDcd088756.60E-85214441No hitNo description
SMARTSM002342.3E-17219442IPR002913START domain
PfamPF018527.2E-29223442IPR002913START domain
Gene3DG3DSA:3.30.530.204.2E-6277440IPR023393START-like domain
SuperFamilySSF559612.75E-7496685No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MDSGGANATG VDLEGTGSNR SNKNCNRHTP QQIQYLETFF KECAHPDEKQ QKQISSQLRL  60
DPRQIKFWFQ NKRTQMKTQL ERADNNSLRC QNERFKSENL AMRDALKNIL CPSCGGPPFG  120
KDEHHSNVEK LQLENAILRK EYERVATEVA NLTGKPISEV NSWVCTRSSI DFTTGGVSNS  180
CMGMRGSTLH LGSSSNITSS SAIYKSETIS DVEKSVMVET AVGAMDELLK VLRSDKPLWT  240
NNNGRYSLNR DCYEKVFLRP NHYKRNISAK LESSKDSCDV DISAIVLVNM LLDPSMWLDL  300
FPTLVTNART LHVVQTGMPG NRSGSLHLNH EIMHALSPLV APREFYFLRY CQQVEIDTWV  360
IADVSYGIPR ENDENLVSNC LKLPSGCIIQ DMPAGHSKVT WVELVEVNDK ASTHRFYRDI  420
VTSGLVFGAE RWIATLKQMC ERAVLSNGVP ANNQGATLSA EGKRSVMDLS HRMVKTFCAT  480
LNMPINKLDF GRVSEANNSG VRVSTRPCTD PNKPQGMVVC MATSVWLPLC PQHVFAFFQD  540
NNMRSQWDFL SHRNPVKEIA RAVSGRHSGN NISIFQPVAH DKSHTVILQE SLVDFLGYYL  600
IFAPLESTAV KMVVAGLNSS NTPVLPSGFV IVGDGRGVST KDVNKTSSGK DSGSLLTVAF  660
QMLLSGTTYT KQKHMEVVAD ANSLISSTVE KIKASLTPSG SSKTVTPSES ICTPP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016649213.10.0PREDICTED: homeobox-leucine zipper protein ROC8
TrEMBLA0A251PUX60.0A0A251PUX6_PRUPE; Uncharacterized protein
STRINGXP_009367126.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11