PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp1222s0051.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 299aa    MW: 32702.2 Da    PI: 8.1219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp1222s0051.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09210253755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++ ++RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  Kaladp1222s0051.1.p 210 IAAKNRRERISERLRILQELVPNG-----TKVDLVTMLEKAIGYVKFLQ 253
                          5679******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.88E-10202257No hitNo description
Gene3DG3DSA:4.10.280.101.4E-11203261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-13203262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.996203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-10209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-6211253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MALDSRAHHQ PNSINNPSFY AFGASPSSAH QHYQVDLLDE DLSLSGLGFH HRLNSKNNLL  60
KLHQQGPHMM QGGASGAGRV LSDSNDRSLI SFEDSNEAAA GGGHGGYEHN SSTRRNAERF  120
VSDSHQTVTS LDSHLLGGEN RSHLKGKASS KDDMLDWFYS PDAADDLARV HKHPNNMEES  180
YMPPNKKQRT STATAKKAKP ASSAKDPQSI AAKNRRERIS ERLRILQELV PNGTKVDLVT  240
MLEKAIGYVK FLQLQVKVLA ADEFWPVQGG KAPELSQVKD AIDAILSSQR SDRNSTSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383310.21e-58putative transcription factor bHLH086
RefseqXP_011021422.12e-58PREDICTED: putative transcription factor bHLH086
TrEMBLA0A2K1X7633e-57A0A2K1X763_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14360.15e-58(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.15e-39RHD SIX-LIKE 1