PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp1154s0002.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 334aa MW: 35947.9 Da PI: 9.1219

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp1154s0002.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	103.7	1.1e-32	1	48	14	61
zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++tkfCyynny++ qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+s Kaladp1154s0002.2.p 1 MDTKFCYYNNYNVLQPRHFCKGCQRYWTAGGAMRNVPVGAGRRKSKNS 48 69*******************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.9E-25	1	47	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-20	1	46	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	23.897	1	47	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MDTKFCYYNN YNVLQPRHFC KGCQRYWTAG GAMRNVPVGA GRRKSKNSAL QNRFLTISEA 60 LQVSSAESPN GMVPGYPGLK RGSVLTIGSD ATVSASTCSV SNLKEMSFLD PGSNLTYKVS 120 EQVVTKSTKV GEINSCGSCI TASNEVESRQ HGHGSFTPTF NSCVTQIPCI SAWPNPWTAA 180 IPPPALPHPG FALPFVPTAY WPCAAIPCSW NGSWVTPQPL PKTMTDAGGI PNSKPPVLGK 240 HSRDGEVLPK DSSVKQTSVL TPKTLRIDHP EEAAKSSIWE TLGIKNETFS KGGLFRDLKP 300 READNIKLVP GNYAHLTSNP AALSRSLIFH EVS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018832575.1	8e-98	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A2I4FLS2	2e-96	A0A2I4FLS2_JUGRE; cyclic dof factor 3-like
STRING	XP_006440609.1	8e-93	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-62	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Kaladp1154s0002.2.p