PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp1154s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | Dof | ||||||||
Protein Properties | Length: 334aa MW: 35947.9 Da PI: 9.1219 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 103.7 | 1.1e-32 | 1 | 48 | 14 | 61 |
zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++tkfCyynny++ qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+s Kaladp1154s0002.1.p 1 MDTKFCYYNNYNVLQPRHFCKGCQRYWTAGGAMRNVPVGAGRRKSKNS 48 69*******************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.9E-25 | 1 | 47 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-20 | 1 | 46 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 23.897 | 1 | 47 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MDTKFCYYNN YNVLQPRHFC KGCQRYWTAG GAMRNVPVGA GRRKSKNSAL QNRFLTISEA 60 LQVSSAESPN GMVPGYPGLK RGSVLTIGSD ATVSASTCSV SNLKEMSFLD PGSNLTYKVS 120 EQVVTKSTKV GEINSCGSCI TASNEVESRQ HGHGSFTPTF NSCVTQIPCI SAWPNPWTAA 180 IPPPALPHPG FALPFVPTAY WPCAAIPCSW NGSWVTPQPL PKTMTDAGGI PNSKPPVLGK 240 HSRDGEVLPK DSSVKQTSVL TPKTLRIDHP EEAAKSSIWE TLGIKNETFS KGGLFRDLKP 300 READNIKLVP GNYAHLTSNP AALSRSLIFH EVS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018832575.1 | 8e-98 | PREDICTED: cyclic dof factor 3-like | ||||
TrEMBL | A0A2I4FLS2 | 2e-96 | A0A2I4FLS2_JUGRE; cyclic dof factor 3-like | ||||
STRING | XP_006440609.1 | 8e-93 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 1e-62 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp1154s0002.1.p |