PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp1147s0001.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 415aa MW: 45261 Da PI: 6.4369

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp1147s0001.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.8e-06	367	389	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f C +G++C++ H+ Kaladp1147s0001.2.p 367 KPCIYFNTARGCIHGANCSYQHD 389 69********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.554	363	391	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MKNWKGNLVR LFLNDEAPSQ VGLGIQDYLQ AKTSSHLHPT SFEDNLPPGF EGVQPTNLSN 60 NLLLEVPTIK WKCPPKLIVD LTWHVAAGEE SQEVEAENHR GLRVLEAIYP RPSSIPPNAV 120 VSVDVKESQN DYQQPPLIPI TPIEEEDVVV DLPYDPMQSK QIGSQGQVAA SGGFSTPVYV 180 GNNSASTSSS DRLFSVAAPG LEPGVLAAAS ATYAAIMKTN QQGNLIDQEL LVQILSDRNL 240 AEKLVNGYGA SNLEAPQHNL PPANLANPPS AQNSRPELSK PAVPVSSSNA PLYLQPNKVL 300 HPIVQGPPPV PVPPAKDINY YKCLIQKHGE DRQEVPQQFG SRTNSQYAMN QDHQRNNPHA 360 SKPKIMKPCI YFNTARGCIH GANCSYQHDT SFQQRVNSMP DAKRMKMDRE ITGA*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MKNWKGNLVR LFLNDEAPSQ VGLGIQDYLQ AKTSSHLHPT SFEDNLPPGF EGVQPTNLSN  60
NLLLEVPTIK WKCPPKLIVD LTWHVAAGEE SQEVEAENHR GLRVLEAIYP RPSSIPPNAV  120
VSVDVKESQN DYQQPPLIPI TPIEEEDVVV DLPYDPMQSK QIGSQGQVAA SGGFSTPVYV  180
GNNSASTSSS DRLFSVAAPG LEPGVLAAAS ATYAAIMKTN QQGNLIDQEL LVQILSDRNL  240
AEKLVNGYGA SNLEAPQHNL PPANLANPPS AQNSRPELSK PAVPVSSSNA PLYLQPNKVL  300
HPIVQGPPPV PVPPAKDINY YKCLIQKHGE DRQEVPQQFG SRTNSQYAMN QDHQRNNPHA  360
SKPKIMKPCI YFNTARGCIH GANCSYQHDT SFQQRVNSMP DAKRMKMDRE ITGA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435141.1	1e-118	zinc finger CCCH domain-containing protein 6
TrEMBL	A0A067GYY2	1e-117	A0A067GYY2_CITSI; Uncharacterized protein
STRING	XP_006473619.1	1e-117	(Citrus sinensis)

Link Out ? help Back to Top
Phytozome	Kaladp1147s0001.2.p