PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp1147s0001.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 426aa MW: 46451.3 Da PI: 6.5833

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp1147s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5e-06	378	400	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f C +G++C++ H+ Kaladp1147s0001.1.p 378 KPCIYFNTARGCIHGANCSYQHD 400 69********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.554	374	402	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MRGSKTRRVS WATDANLCQV RLFLNDEAPS QVGLGIQDYL QAKTSSHLHP TSFEDNLPPG 60 FEGVQPTNLS NNLLLEVPTI KWKCPPKLIV DLTWHVAAGE ESQEVEAENH RGLRVLEAIY 120 PRPSSIPPNA VVSVDVKESQ NDYQQPPLIP ITPIEEEDVV VDLPYDPMQS KQIGSQGQVA 180 ASGGFSTPVY VGNNSASTSS SDRLFSVAAP GLEPGVLAAA SATYAAIMKT NQQGNLIDQE 240 LLVQILSDRN LAEKLVNGYG ASNLEAPQHN LPPANLANPP SAQNSRPELS KPAVPVSSSN 300 APLYLQPNKV LHPIVQGPPP VPVPPAKDIN YYKCLIQKHG EDRQEVPQQF GSRTNSQYAM 360 NQDHQRNNPH ASKPKIMKPC IYFNTARGCI HGANCSYQHD TSFQQRVNSM PDAKRMKMDR 420 EITGA*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MRGSKTRRVS WATDANLCQV RLFLNDEAPS QVGLGIQDYL QAKTSSHLHP TSFEDNLPPG  60
FEGVQPTNLS NNLLLEVPTI KWKCPPKLIV DLTWHVAAGE ESQEVEAENH RGLRVLEAIY  120
PRPSSIPPNA VVSVDVKESQ NDYQQPPLIP ITPIEEEDVV VDLPYDPMQS KQIGSQGQVA  180
ASGGFSTPVY VGNNSASTSS SDRLFSVAAP GLEPGVLAAA SATYAAIMKT NQQGNLIDQE  240
LLVQILSDRN LAEKLVNGYG ASNLEAPQHN LPPANLANPP SAQNSRPELS KPAVPVSSSN  300
APLYLQPNKV LHPIVQGPPP VPVPPAKDIN YYKCLIQKHG EDRQEVPQQF GSRTNSQYAM  360
NQDHQRNNPH ASKPKIMKPC IYFNTARGCI HGANCSYQHD TSFQQRVNSM PDAKRMKMDR  420
EITGA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435141.1	1e-128	zinc finger CCCH domain-containing protein 6
TrEMBL	A0A067GYY2	1e-127	A0A067GYY2_CITSI; Uncharacterized protein
TrEMBL	V4TFC9	1e-127	V4TFC9_9ROSI; Uncharacterized protein
STRING	XP_006473619.1	1e-127	(Citrus sinensis)

Link Out ? help Back to Top
Phytozome	Kaladp1147s0001.1.p