PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp1117s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 352aa MW: 38101.1 Da PI: 8.3384 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.8 | 6.8e-12 | 162 | 186 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 y + Cr +a+tG C+yG++C+F+H Kaladp1117s0007.1.p 162 YTMDVCRSWAETGSCQYGSNCQFSH 186 56789******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.5E-6 | 161 | 188 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.94E-8 | 161 | 191 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.633 | 161 | 189 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-10 | 162 | 190 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 162 | 186 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MENFYNNKIP MYPNRADMNS KMAGSPYTAW SGGYYNLHRM MTPPPLDPYA FDNRENIDPQ 60 LLMSWSCSSS SSGDNFSTPS AVNRPRYWGG YGNRSPLSLM ESFGKSTSSS ATRSPPVFAN 120 GALAMEEGVL VMDGVLVGNG HGGRQRSGKD SSGSSSSSVK SYTMDVCRSW AETGSCQYGS 180 NCQFSHRKED ANRARFSNKG KPELEVTFPR SPFSDSSLSI FRGQNSYSSP TMSSRGVVYG 240 RSPLGTGSAD GSRSSDSQTS RTELSPVIHS DWVPQDEGID VRPPGVENPT REEVLAYMNS 300 IMYGPRVRKR LPVFTSICPD SPPGSPSPTP PAPTHLPPIC PASNPRDSSF S* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Link Out ? help Back to Top | |
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Phytozome | Kaladp1117s0007.1.p |