PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp1072s0001.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 331aa    MW: 36884.8 Da    PI: 8.0366
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp1072s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd++l++++ ++G+g +W + + + g++R++k+c++rw++yl
  Kaladp1072s0001.1.p 14 KGPWSPEEDLKLKEYIDKHGTGgNWISLPLKAGLRRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding33.31.1e-1069111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g ++  Ed ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Kaladp1072s0001.1.p  69 GEFSDHEDRIICTLYYNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                          789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.73966IPR017930Myb domain
SuperFamilySSF466892.94E-2611109IPR009057Homeodomain-like
SMARTSM007171.9E-111364IPR001005SANT/Myb domain
PfamPF002494.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-231569IPR009057Homeodomain-like
CDDcd001678.44E-91662No hitNo description
PROSITE profilePS5129414.35467117IPR017930Myb domain
SMARTSM007175.2E-1067115IPR001005SANT/Myb domain
PfamPF002497.5E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2270118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDLKLKEYID KHGTGGNWIS LPLKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDHEDRIIC TLYYNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLVAA  120
NYVAPLPLSS LSSSPNSELM HHPHLQYLPS PTAALCTSAC YFKDPSARLL LPAAAVGCFT  180
SSSSDNDLKY GSGDQMFHHH HADNYVAGTV NLQNYPQLNN NKDYNNSFAM LGGTTDGSCT  240
SSDGSNSNIN TKYHISHELY QIGFHDHGGV RNKLVVQDDI YIYIYIYIYI CSTHLRLALA  300
LSSFVAHILG VICHLLEQEV CLVNWTTDGS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581397.16e-80transcription factor RAX2
TrEMBLI1IWF51e-78I1IWF5_BRADI; Uncharacterized protein
STRINGBRADI5G03882.12e-79(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-75myb domain protein 36