PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0912s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WOX | ||||||||
Protein Properties | Length: 304aa MW: 32498.8 Da PI: 5.1142 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.4 | 3.3e-15 | 42 | 102 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p +ee ++ + l + +++V++WFqNrR + ++ Kaladp0912s0009.1.p 42 RSRWTPKPEQILILESIFNSgMVNPPKEETVRIRRVLekfgPVGDANVFYWFQNRRSRSRR 102 89*****************99****************99999****************997 PP | |||||||
2 | Wus_type_Homeobox | 104.7 | 5.9e-34 | 41 | 104 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q Kaladp0912s0009.1.p 41 VRSRWTPKPEQILILESIFNSGMVNPPKEETVRIRRVLEKFGPVGDANVFYWFQNRRSRSRRRQ 104 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.98E-14 | 36 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.515 | 38 | 103 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-9 | 38 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.1E-6 | 40 | 107 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.1E-13 | 42 | 102 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MNDHGNPEAD SGSSITYDAS NPSQRQTHVA QSPDRASSEQ VRSRWTPKPE QILILESIFN 60 SGMVNPPKEE TVRIRRVLEK FGPVGDANVF YWFQNRRSRS RRRQRQIQAN MEANVRNTTQ 120 YDPSSNFNSP NSSMIIPIAS GFVGISGSNA AVDSGTSIPP FLIPSSSETL SGSASSSSPS 180 ALSAAAFGAT GVQGFLSEMG FEDIEDNGTQ AIASSFLCTS DVTSDLQYQQ PGGEGAEGGG 240 FVTVFINGVP TEVPRGPLDM KAMCGHDFLL VHSSGHPVPI NEYGFSAHSL QHGESYFLVA 300 KSI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00330 | DAP | Transfer from AT3G03660 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015578806.1 | 8e-73 | WUSCHEL-related homeobox 11 isoform X2 | ||||
Swissprot | Q6X7J3 | 9e-63 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | B9SI52 | 5e-71 | B9SI52_RICCO; Protein WUSCHEL, putative | ||||
STRING | XP_002525671.1 | 8e-72 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.2 | 2e-60 | WUSCHEL related homeobox 11 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0912s0009.1.p |
Publications ? help Back to Top | |||
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