PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0878s0027.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 19248.1 Da PI: 8.7656 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.7 | 9.1e-39 | 20 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca+ C+++pyf +p+kf +vh++FGasnv+kll ++pe r da+++lvyeA++r+rdPvyG++g i +lqqql +l Kaladp0878s0027.1.p 20 PCAACKLLRRRCAEACPFSPYFSPLEPHKFLAVHRVFGASNVSKLLLEAPEGLRADAANTLVYEANVRIRDPVYGCMGAIAALQQQLLSL 109 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +a+l+++++e Kaladp0878s0027.1.p 110 QAQLDAVRAE 119 *****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.188 | 19 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-38 | 20 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MTEKREQVLG PEVALNKVTP CAACKLLRRR CAEACPFSPY FSPLEPHKFL AVHRVFGASN 60 VSKLLLEAPE GLRADAANTL VYEANVRIRD PVYGCMGAIA ALQQQLLSLQ AQLDAVRAEI 120 LKHDVKISQA AAASSAPSIS SKNSTIALAA ISNNNISIQT ATTHHHQGDH HLMRSSSAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-40 | 20 | 123 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-40 | 20 | 123 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021625453.1 | 2e-65 | LOB domain-containing protein 15-like | ||||
Swissprot | Q9AT61 | 6e-60 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A2C9V3A6 | 4e-64 | A0A2C9V3A6_MANES; Uncharacterized protein | ||||
TrEMBL | A0A2P5AHJ8 | 5e-64 | A0A2P5AHJ8_TREOI; Wilm's tumor protein | ||||
STRING | cassava4.1_029925m | 7e-65 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-53 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0878s0027.1.p |
Publications ? help Back to Top | |||
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