PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0868s0040.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 284aa MW: 31700.5 Da PI: 6.7907 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd ll +++ + G g W++++ + g++R++k+c++rw++yl Kaladp0868s0040.2.p 14 KGAWSEEEDALLRECIDKNGEGKWHLVPLKSGLNRCRKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.3e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++l Kaladp0868s0040.2.p 67 RGKFSEDEVDLLLRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.206 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-20 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.38E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.407 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.21E-6 | 87 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MLAAEHDGPR GVRKGAWSEE EDALLRECID KNGEGKWHLV PLKSGLNRCR KSCRLRWLNY 60 LKPNIRRGKF SEDEVDLLLR LHKLLGNRWS LIAGRLPGRT ANDVKNYWNT HLRKKTMLRL 120 QAAAAAADCH RATTKVIRPR PQTFSKTLRV QCMRSSQQQQ QAAPAAGLLQ HTTTSTTAVS 180 KLEGHHDNNA NPDAAEEQIQ WWKSLLDDQL SDGQEVAAAA LASESRSDDH VSYEIWAAED 240 QSGDRPEETG LMTGEVAFDI ELWDFLADDE AQATSNLLQG PSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-22 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9FNV9 | 5e-66 | MY113_ARATH; Transcription factor MYB113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-59 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0868s0040.2.p |
Publications ? help Back to Top | |||
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