PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0809s0115.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HB-PHD
Protein Properties Length: 622aa    MW: 69949.5 Da    PI: 7.2088
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0809s0115.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-093974401053
                          HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                            +e L ++F+++  ps++ +  L+k lgL+ ++V  WF+N R+
  Kaladp0809s0115.1.p 397 VAVEKLRQVFAEDELPSKSVKDNLSKLLGLSPEKVNKWFKNARY 440
                          56899*************************************97 PP
2PHD33.78.1e-12122176150
                          SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                  PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                          +C+ C+   +  +++++lCdg C+ +fH+kCl+++l+++++p +   w+C+ C++
  Kaladp0809s0115.1.p 122 ICAKCKLreAFPDNDIILCDGiCNCAFHQKCLDPPLSTDNIPPEdqGWFCKFCQC 176
                          588888854455********88*******************99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.1E-13114179IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.0E-11118177IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.077120177IPR019787Zinc finger, PHD-finger
PfamPF006284.4E-9122176IPR019787Zinc finger, PHD-finger
SMARTSM002491.0E-7122175IPR001965Zinc finger, PHD-type
CDDcd155041.75E-27123174No hitNo description
PROSITE patternPS013590123174IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.4E-11380439IPR009057Homeodomain-like
PROSITE profilePS5007112.082385445IPR001356Homeobox domain
SMARTSM003892.4E-10387449IPR001356Homeobox domain
SuperFamilySSF466894.23E-10387451IPR009057Homeodomain-like
CDDcd000862.00E-9388440No hitNo description
PfamPF000468.9E-7397440IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MLPAEEDVVV ADVSKRRRKR RRQGKKVASD DAARLQRRAR YLLIKIKLEQ NLIDAYAGEG  60
WKGQSREKIR PEKELQRAYK QILKCKLGIR DAIRQLESLG SVGSMEDSLI APDGSVHHEH  120
IICAKCKLRE AFPDNDIILC DGICNCAFHQ KCLDPPLSTD NIPPEDQGWF CKFCQCRMDI  180
IDVMNAHLGT HISMGSNWQD IFSEEASIVD GADDPPHIGE VQWPSDDSND DDYDPEKKEC  240
SYSTGLMEAE DSSSLSRCDS VSISWSFEEE AFSDLQGSQH SGMPAVMNSA CFQSCADSAG  300
TMTDMTIEGC RQRRTVDYKK LYIEMFGKDA PGNEQLSEDE DWGPGKRIRK EKESYAASTL  360
MTLFSCENID PDDAVQAKEE HHQGAHSRRP LFRIPPVAVE KLRQVFAEDE LPSKSVKDNL  420
SKLLGLSPEK VNKWFKNARY LALRNRKMGS SIGCPNPIGT CSNESPLNEQ CVENKVICGD  480
TLNGGSSSSL VNASMIKQSG YRAQSLSNLR KKKRHRRTLL GLSSCNTTKV MMDFNENVSL  540
KQQLQLLKSA SKKRIWNHLD FKEGFNRRPT RVEMEMERLC TIKCRVDGML ENLSVLLKQK  600
SGTPKAEAVV YVPIAEVKEK F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11521RRRKRRR
21721RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269263.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_010656753.10.0PREDICTED: pathogenesis-related homeodomain protein
TrEMBLD7UBI50.0D7UBI5_VITVI; Uncharacterized protein
STRINGVIT_11s0103g00650.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-88pathogenesis related homeodomain protein A