PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0808s0016.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 420aa MW: 46544.8 Da PI: 9.1113

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0808s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4e-32	237	290	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Kaladp0808s0016.1.p 237 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 290 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-28	234	290	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.4E-15	235	290	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-23	237	290	IPR006447	Myb domain, plants
Pfam	PF00249	7.5E-7	238	289	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MELFPAQPDL SLLISPPSST TKPNHTALLW PHTSRSSDHE QVVDEEDQEQ NSDLGFWNRA 60 LNNNNPSIIL SKQQTGPNPA PSNISFSNPS IRVSSSSSPK SSNITYFPHH QLLHTSPLPN 120 PNNLHLQVTM IAQNQEQLGY MNMKPIRGIP IYHQNSAHRR HPFTASTFPH QHQSLLLDSI 180 PSLPSSISNT KSCSSINGSL ASPASCFQSS NNQNYHNGFV RSRFLSRFPG KKNTRAPRMR 240 WTSTLHARFV HAVELLGGHE RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKTTDRAAAT 300 SDAYENGSSG DNSEDMMLDI QSSARKQSDQ LHQHSISSAA GRPNAQQDND CHALWSNSSS 360 REARLHAGKP KDSYQGTIAS LEGMGDSRCL SFYERSSEEI IIGRIMKKPN LEFTLGRAL*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MELFPAQPDL SLLISPPSST TKPNHTALLW PHTSRSSDHE QVVDEEDQEQ NSDLGFWNRA  60
LNNNNPSIIL SKQQTGPNPA PSNISFSNPS IRVSSSSSPK SSNITYFPHH QLLHTSPLPN  120
PNNLHLQVTM IAQNQEQLGY MNMKPIRGIP IYHQNSAHRR HPFTASTFPH QHQSLLLDSI  180
PSLPSSISNT KSCSSINGSL ASPASCFQSS NNQNYHNGFV RSRFLSRFPG KKNTRAPRMR  240
WTSTLHARFV HAVELLGGHE RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKTTDRAAAT  300
SDAYENGSSG DNSEDMMLDI QSSARKQSDQ LHQHSISSAA GRPNAQQDND CHALWSNSSS  360
REARLHAGKP KDSYQGTIAS LEGMGDSRCL SFYERSSEEI IIGRIMKKPN LEFTLGRAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-17	238	292	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-17	238	292	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-16	238	292	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	238	292	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	238	292	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	238	292	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-17	238	292	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-17	238	292	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-17	238	292	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-17	238	292	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-17	238	292	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-17	238	292	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015898005.1	3e-99	probable transcription factor KAN2 isoform X3
Swissprot	Q9C616	1e-60	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A067KUB8	6e-96	A0A067KUB8_JATCU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	9e-62	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0808s0016.1.p

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]