PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0747s0018.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 266aa MW: 29968.7 Da PI: 9.2389

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0747s0018.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.5e-31	25	79	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt eLHerF ea++qLGG+++AtPk il++m+v+gLt++hvkSHLQkYR+ Kaladp0747s0018.1.p 25 KERLRWTDELHERFEEAINQLGGADRATPKGILKTMDVPGLTIYHVKSHLQKYRV 79 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.411	22	82	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-30	23	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.51E-19	23	79	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-24	25	79	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-8	27	78	IPR001005	SANT/Myb domain
Pfam	PF14379	1.9E-8	110	150	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MGTSSGVSEE NNGSSSSTSS SSNRKERLRW TDELHERFEE AINQLGGADR ATPKGILKTM 60 DVPGLTIYHV KSHLQKYRVA KFVPESSNRG KYERRSISEM LPNFSATSAV QLNEALRLHM 120 EAERQLSHRM EASLKLKIEA QGRYMDRITE DLRAGKTVAM KPAKPFNPIT SLPSLCDESE 180 SNSPKDQLSE PHLQSRALKR FRVENDLVSA PQMPDNYAPQ YLTRPYDGQT EMFNNQGLRR 240 VQYPVHDMSV PWNLTFSGPS PLMPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-25	25	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-25	25	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-25	25	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-25	25	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002264119.2	6e-83	PREDICTED: myb family transcription factor PHL7
TrEMBL	B9HCX3	4e-79	B9HCX3_POPTR; Uncharacterized protein
STRING	POPTR_0006s10190.1	6e-80	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	6e-48	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0747s0018.1.p