PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0714s0001.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 291aa    MW: 33030.4 Da    PI: 8.2727
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0714s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.4e-116387226
                         -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                         +++ C +++ t tCk+G++CkF H+
  Kaladp0714s0001.1.p 63 GEKDCTHYMLTRTCKFGETCKFDHP 87
                         7889********************8 PP
2zf-CCCH29.71.1e-09114139227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++ C++f++t  Ck+G  CkF+H++
  Kaladp0714s0001.1.p 114 GEPDCPYFLKTQRCKFGLMCKFNHPK 139
                          6899********************96 PP
3zf-CCCH38.71.6e-12159184227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C f+++tG+Ck+G++C+F+H++
  Kaladp0714s0001.1.p 159 FEPICAFYLKTGICKFGATCRFHHPK 184
                          689*********************96 PP
4zf-CCCH32.31.7e-10239260526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+f+++tG Cky  +C+++H+
  Kaladp0714s0001.1.p 239 DCPFYLKTGSCKYSVTCRYNHP 260
                          7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2256189IPR000571Zinc finger, CCCH-type
SMARTSM003560.00316188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-56288IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-86387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.0016786IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864112140IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5112139IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-7114139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.26E-5117142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4118140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53157185IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5157184IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-10159184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6162185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5162183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.746234262IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4234261IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-8239260IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MCSYVFPFFI YAYLLFILVL YHHNIVSTHN PIGQNDWLSM SYLAKRPRIE GSSILPIYPQ  60
RPGEKDCTHY MLTRTCKFGE TCKFDHPIWV PEGGIPDWKE VPPVATECLP ERSGEPDCPY  120
FLKTQRCKFG LMCKFNHPKE KLVYLNDKGE SGALPERPFE PICAFYLKTG ICKFGATCRF  180
HHPKDIQRSV LEQGSLTAEL KSFSAKIQGT TGDVKPNVIL TPALAHNAKG LPVRPGELDC  240
PFYLKTGSCK YSVTCRYNHP DRTGTYTVDF IIILYITNKT HVLVNCEIMM *
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894428.11e-118zinc finger CCCH domain-containing protein 37-like
SwissprotQ941Q31e-106C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A061FC851e-116A0A061FC85_THECC; Floral homeotic protein isoform 3
TrEMBLA0A251PJL91e-116A0A251PJL9_PRUPE; Uncharacterized protein
STRINGPOPTR_0008s07980.11e-117(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-109floral homeotic protein (HUA1)