PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0674s0167.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 291aa    MW: 32771 Da    PI: 9.087
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0674s0167.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.91.3e-55141401129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL+kkv+++ +++  +i e+d++k+ePwdLp+++k + +ewyfF+ rdkky+tg r+nrat+sgyWkatgkdk
  Kaladp0674s0167.1.p  14 LPPGFRFHPTDEELITHYLCKKVSDSGFRA-IAIGEADLNKSEPWDLPRNAKMGGNEWYFFCLRDKKYPTGLRTNRATQSGYWKATGKDK 102
                          79**************************99.88***************9889999*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++ ++ lvg+kktLvfy+grapkg k++Wvmheyrle
  Kaladp0674s0167.1.p 103 EIHR-GKFLVGMKKTLVFYRGRAPKGAKSNWVMHEYRLE 140
                          ***9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-6110164IPR003441NAC domain
PROSITE profilePS5100556.72214164IPR003441NAC domain
PfamPF023659.8E-3015139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDRVEGADPD QIELPPGFRF HPTDEELITH YLCKKVSDSG FRAIAIGEAD LNKSEPWDLP  60
RNAKMGGNEW YFFCLRDKKY PTGLRTNRAT QSGYWKATGK DKEIHRGKFL VGMKKTLVFY  120
RGRAPKGAKS NWVMHEYRLE GKLSLQNLPQ TAKTEWVISR VFEKCDGVKK PHFPSLLSQA  180
GFRGHPTGLP PLTDSPPNTS TPRPEQQHAP CFSNQDPLAL ANSFTFWPTQ VDHQSLLNYP  240
NLPPQDQAML THFLTGQSQT RRPHFKTENA EAGGASSSMG PVDLDSLWNY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-5141706171NO APICAL MERISTEM PROTEIN
1ut4_B2e-5141706171NO APICAL MERISTEM PROTEIN
1ut7_A2e-5141706171NO APICAL MERISTEM PROTEIN
1ut7_B2e-5141706171NO APICAL MERISTEM PROTEIN
3swm_A3e-5141709174NAC domain-containing protein 19
3swm_B3e-5141709174NAC domain-containing protein 19
3swm_C3e-5141709174NAC domain-containing protein 19
3swm_D3e-5141709174NAC domain-containing protein 19
3swp_A3e-5141709174NAC domain-containing protein 19
3swp_B3e-5141709174NAC domain-containing protein 19
3swp_C3e-5141709174NAC domain-containing protein 19
3swp_D3e-5141709174NAC domain-containing protein 19
4dul_A2e-5141706171NAC domain-containing protein 19
4dul_B2e-5141706171NAC domain-containing protein 19
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258290.11e-107PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLR31e-103NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A1U8A0S91e-105A0A1U8A0S9_NELNU; NAC domain-containing protein 100-like
STRINGXP_010258290.11e-106(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.11e-105NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]