PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0674s0076.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 398aa    MW: 44580.7 Da    PI: 5.9805
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0674s0076.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-17137183148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g W+ e d ll+++v+++G + W++Ia++++ gR +kqc++rw+++l
  Kaladp0674s0076.1.p 137 KGQWSLEQDMLLIQLVERYGIRKWSLIAQMLP-GRIGKQCRERWHNHL 183
                          799*****************************.*************97 PP
2Myb_DNA-binding58.41.6e-18191231345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           W++eEde+l++a+k+ G++ W+ Ia++++ gRt++++k++w+
  Kaladp0674s0076.1.p 191 IWSEEEDEILIRAHKEIGNK-WSEIAKRLP-GRTENSIKNHWN 231
                          6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.496132187IPR017930Myb domain
SuperFamilySSF466891.87E-31134230IPR009057Homeodomain-like
SMARTSM007171.9E-15136185IPR001005SANT/Myb domain
PfamPF002498.2E-16137183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-23138187IPR009057Homeodomain-like
CDDcd001671.13E-14140183No hitNo description
Gene3DG3DSA:1.10.10.601.2E-22188236IPR009057Homeodomain-like
PROSITE profilePS5129420.785188238IPR017930Myb domain
SMARTSM007175.5E-17188236IPR001005SANT/Myb domain
CDDcd001671.64E-14192234No hitNo description
PfamPF002491.5E-16192231IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MIPRPSSNWS MWDVMMNLDE QAMCFSDDNY STRPSIGSSS SGLDAFSPYD RFLRGDPAYG  60
LIPGRASPLL DSFCSYGRMA QFYAKGSGYQ ELEPVSNIMA MGNSNVAPDE VSNVAAHGDR  120
SRARRKGANK ASQDVIKGQW SLEQDMLLIQ LVERYGIRKW SLIAQMLPGR IGKQCRERWH  180
NHLRPDIKKD IWSEEEDEIL IRAHKEIGNK WSEIAKRLPG RTENSIKNHW NATKRKQNAK  240
RKTRSKNPKS SSLLLQYIRG LNCSSSDGST TKPCDPRKKG ARSRASENEG KSPEHQGRIQ  300
VVDCGLEFSS EDRLVPDYGE FGDVPDLDFM DDDKLFGEDG SIDSFLDSIE FLPSFDDGGN  360
GDEKHDIGAA DRGAEERDGG GVRRDMDLVE MISQQVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-441342371104MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-441352372104C-Myb DNA-Binding Domain
1msf_C6e-441352372104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9S7L22e-71MYB98_ARATH; Transcription factor MYB98
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-73myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]