PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0671s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 30185.6 Da PI: 6.93 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+ eEd+ l+d+v+ +G+g+W++++r+ g++R++k+c++rw +yl Kaladp0671s0007.1.p 18 KGLWSVEEDQMLLDYVNTHGKGHWNRVSRKTGLKRSGKSCRLRWMNYL 65 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.8 | 1.3e-18 | 71 | 116 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r r+T++Ed+l+++++k+lG++ W++Ia +++ gRt++q+k++w+++l Kaladp0671s0007.1.p 71 RERFTEDEDDLIIRLHKLLGNR-WALIAGRVP-GRTDNQVKNYWNTHL 116 78********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.283 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.58E-31 | 15 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-15 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-16 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-22 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.23E-12 | 21 | 65 | No hit | No description |
PROSITE profile | PS51294 | 27.583 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 8.1E-18 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-17 | 71 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-26 | 73 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.31E-14 | 73 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MKDSKPQMNG SSEDRVRKGL WSVEEDQMLL DYVNTHGKGH WNRVSRKTGL KRSGKSCRLR 60 WMNYLSPSVK RERFTEDEDD LIIRLHKLLG NRWALIAGRV PGRTDNQVKN YWNTHLSKKL 120 DTPNTQPAHS KPVIMHNCSE LRSCCSGNNL STAPADDQMI SSDFSSNTTC GTKTRSVTVP 180 IETANTEEED ETNIMKESVS GDVANRQIGA LQTSKADELR QIETVAADAG ADDDGDHGSC 240 CFMQYLDDYT LHFVLNNNKR NNAASATAGM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 18 | 122 | 7 | 110 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021592359.1 | 2e-62 | transcription factor WER-like | ||||
TrEMBL | A0A2C9UKK7 | 4e-61 | A0A2C9UKK7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033883m | 7e-62 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 1e-63 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0671s0007.1.p |