PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0666s0032.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 277aa MW: 30356 Da PI: 6.9773

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0666s0032.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.9	1.5e-30	88	141	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Kaladp0666s0032.1.p 88 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 141 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.059	85	144	IPR017930	Myb domain
SuperFamily	SSF46689	2.42E-20	85	145	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-30	87	146	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-24	89	141	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-7	91	140	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MKEDESNWLS RWEEQLPSPD ELMPLSQTLI TPHLALVFDL HNPNNPQSTP LPAPTPSSLA 60 HPSSSEFENS GDLGSGAGGD EPARTLKRPR LVWTPQLHKR FVDAVAHLGI KNAVPKTIMQ 120 LMSVDGLTRE NVASHLQKYR LYLKRMQGHS NGGGGLASSD PATDHLFASS PVPAHFLHPV 180 RPGQDHFMPF VAPPQSGRPI WVTHPQLQQQ FHQQRQVGQV GHFGSPHSNG QFEHSFMTRQ 240 QAGPRMGAPP PYGEDVESGE ANGRRTVLTL FPTGDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	6e-32	88	144	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036386.1	1e-116	PREDICTED: transcription factor PCL1
Swissprot	O22210	6e-65	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	A0A059A3P3	1e-115	A0A059A3P3_EUCGR; Uncharacterized protein
STRING	XP_010036386.1	1e-116	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	1e-85	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0666s0032.1.p

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]