PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0550s0079.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 333aa MW: 35428.7 Da PI: 8.6144

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0550s0079.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.4e-39	39	99	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk++ Kaladp0550s0079.1.p 39 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTHGGALRNVPVGGGCRRNKRTG 99 56789*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-37	23	97	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.3E-33	43	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.711	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MPPPPPTASQ TAGGGVGSSS IIRPGSMADR ARQANIPQPE PGLKCPRCES TNTKFCYFNN 60 YSLSQPRHFC KTCRRYWTHG GALRNVPVGG GCRRNKRTGN KTTGAAGSKP VNVEQDNNLN 120 NNNNNNGSIS PVISSTMLED SSSLHQPRLA QIPFLASLQG LAGHYGSPPS SLGLSFSSMM 180 SAAVAQDQLG FQIGGNSNSN NSSGSGSDHQ WRPHHFPNFL AGFDPPQQIP HSSLFQFPVD 240 HSHQSTHPPL RSSVSQQPAR PPDNPSTDHH QQSDEAGAKA EAAAAGQQGG MDTNLVSRSF 300 LGTSDHSNNN QYWNNSTWTD MSGLNSSTTS LL*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00295	DAP	Transfer from AT2G37590	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	9e-47	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Kaladp0550s0079.1.p