PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0550s0043.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 393aa MW: 43042.9 Da PI: 4.2716 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.8 | 1.3e-10 | 200 | 247 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ErrRR r+++ ++ Lr+l+P+ +K++ a+i+ A+ Y++sLq Kaladp0550s0043.1.p 200 SKRIVSERRRRGRMKDNLHALRSLVPSI-----TKMDRASIVGDAILYVQSLQ 247 556678*********************7.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.71E-15 | 197 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.335 | 197 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-16 | 199 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.84E-11 | 199 | 247 | No hit | No description |
Pfam | PF00010 | 5.8E-8 | 201 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-10 | 203 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034756 | Biological Process | regulation of iron ion transport | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0071369 | Biological Process | cellular response to ethylene stimulus | ||||
GO:0071732 | Biological Process | cellular response to nitric oxide | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MTDQYIPVTT MDGMYSSSTD HNHLAPPAII PDDFGCLHDD FITAYDFDQL LELIRDDDKE 60 EGSADPAVAD AYGSRCVEQQ QLLTIQDYEV DRLMMSVVEI ESRRFDTDEH ELVVVDAADA 120 QPQISIDMFA ACFGGGEFDN AAPVDLGGFM GGDSVPCMVD ALGVGEDDDD EDDGGVDGND 180 SYGNTTMIST TKTTGKTDRS KRIVSERRRR GRMKDNLHAL RSLVPSITKM DRASIVGDAI 240 LYVQSLQSKA NRLKVELAEL EASAASQGLY ATEHSNFHIA TSSANKRSTP PVPRYIKQMD 300 ACQVGEGEFY VKLVSNKGEE IAACLHKAIE SLRDGFTLQS SNLSLVSDDY ALTFTLRVKD 360 GGEEMNLPNL KMWLSRALHG HDFILEVSPS IN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Essential protein involved in iron uptake responses. Regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation. Confers enhanced iron mobilization responses at low iron supply. {ECO:0000269|PubMed:15539473, ECO:0000269|PubMed:15556641, ECO:0000269|PubMed:16117851}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In roots by iron deficiency. Repressed by cytokinins. Induced by cold, UV, ethylene (ACC), jasmonic acid (JA), flagellin, and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15531708, ECO:0000269|PubMed:15539473, ECO:0000269|PubMed:15556641, ECO:0000269|PubMed:18397377}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018857086.1 | 6e-58 | PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR | ||||
Swissprot | Q0V7X4 | 2e-58 | FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28160.1 | 4e-40 | FER-like regulator of iron uptake |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0550s0043.1.p |