PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0515s0212.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | FAR1 | ||||||||
Protein Properties | Length: 792aa MW: 91821.2 Da PI: 9.0313 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 80.1 | 3.9e-25 | 96 | 182 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA + GF +rk+ s +s+rnge++++++vC+keg+++ ++ +++++r rtgC+ak+++ ++ +gkw+v+k++ eHnH+l+ Kaladp0515s0212.2.p 96 AYNHYAARRGFGIRKHFSARSRRNGEVIRKEYVCNKEGFKNVVPQT-IDHKKRRRDARTGCQAKIEIGQK-SGKWVVDKFSDEHNHPLT 182 5*****************************************9999.89999999*************99.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-23 | 96 | 182 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.4E-35 | 304 | 397 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.039 | 581 | 617 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.4E-5 | 592 | 619 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 3.8E-4 | 593 | 610 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MDQPNNNPQP TETETRPEEG ADGALFYSGF PISQQSRLEN FMDYGSVLSN NLMEDAPIQM 60 DSRNTDNTIV RDASCEKVVD SLLGKYFDTM EEAYDAYNHY AARRGFGIRK HFSARSRRNG 120 EVIRKEYVCN KEGFKNVVPQ TIDHKKRRRD ARTGCQAKIE IGQKSGKWVV DKFSDEHNHP 180 LTSPNKVLKH RSHCKYHKSI EGKKLIYDLH AAGLTPSQIM KAVNTLTGTL HEDITAKKCS 240 EVLRTHKRNH VGKECLGIIK HFQEKSGRGD DFYFNVQIDN DGCLRNVFWA DERSRTSYLK 300 FGDVMVFDVT YRTNKFKMPF SPFVGVNHHR QSVLFGGALL DDETEETFVW LFEQFLKCMN 360 FKPPQAIITD QDKAIRNAVK RVFPDARHRF CAWHIKKHVL EHIQPFRTRY KDFADTFYIW 420 IKSKSPKEFE EGWKILNEKY KIGEKGWLPT MYKDRRYWVK CYLKNTFFAG MTTSGRSESI 480 HSFFDGYVNA TTPLNEFVVQ YDKAVAARRK SEEDEDFSTL NSQPALITEH GIEKDAGRYY 540 TRSIFQLFQR EWHASLSLEH TKRQISDMLV SYFVGSDREQ QTVEYDSEQQ IVRCSCAKFE 600 TDGILCKHAL YILKKKKIKN LPKNYLLYRW TIDARYHMAH KLVESEDAKA SDHVVSAEEK 660 WVARTMFHQI IRDADYSPSI FKEFIQTSKI FMVRLRGERE VTENALIVES SIQSQSTCEV 720 SHVELEPTQV TILDPACDKV NKGRPKSASR IPSAIEKIKN YKCSECKRNG HNKTTCPEKK 780 VLPKSFTAYG C* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 612 | 622 | LKKKKIKNLPK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023745122.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2U1MT61 | 1e-149 | A0A2U1MT61_ARTAN; Protein FAR1-RELATED SEQUENCE 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-124 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0515s0212.2.p |