PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0515s0205.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 277aa MW: 30872.6 Da PI: 7.2367

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0515s0205.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.4	2.2e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l +++ +G g W+ I++ g+ R++k+c++rw++yl Kaladp0515s0205.1.p 14 KGAWTASEDKILTGYITAHGEGKWRDIPKLSGLQRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.1	6.2e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ Kaladp0515s0205.1.p 67 RGNISADEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 111 7899****************.*****.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.812	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.55E-28	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-10	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-12	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	9.50E-8	16	61	No hit	No description
PROSITE profile	PS51294	24.017	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-24	65	116	IPR009057	Homeodomain-like
SMART	SM00717	3.9E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-14	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.76E-11	71	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MGRKPCCPKT GVKKGAWTAS EDKILTGYIT AHGEGKWRDI PKLSGLQRCG KSCRLRWLNY 60 LRPDIKRGNI SADEEDLIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT HHAKKLAQPV 120 RNNRQNVSLH KNSSLHKPAE AAFLGPPNRT SDMNNVAKAK HVESCFVPVP AMPWRNGSVQ 180 GDQDCLDVGW DFELGDISLC GDEFDWIFSD SEEVHDFHGT EAPIRSESPE NLGDYLENRA 240 AGQKDYDGVK PSSSAAAADE RTSVEDWAGY FLLTSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-23	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0B2PK12	6e-66	A0A0B2PK12_GLYSO; Anthocyanin regulatory C1 protein
TrEMBL	A0A1S3UL12	1e-66	A0A1S3UL12_VIGRR; transcription factor MYB8
TrEMBL	I1LY44	6e-66	I1LY44_SOYBN; Uncharacterized protein
STRING	GLYMA13G16890.1	1e-66	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	3e-61	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Kaladp0515s0205.1.p