PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0489s0004.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 203aa MW: 22789.3 Da PI: 7.9571

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0489s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.2	1.1e-16	39	88	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f++Lr+l+P++ ++K + a+ L ++++Y+++Lq Kaladp0489s0004.1.p 39 RSKHSVTEQRRRSKINERFQRLRDLIPNS----DQKRDTASFLLEVIDYVQYLQ 88 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	8.6E-22	34	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-19	35	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.71	37	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.99E-15	39	88	No hit	No description
Pfam	PF00010	5.1E-14	39	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-11	43	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MRSGVKNSNE EEDYGEEDQG GNQSKRDGKG SASKANATRS KHSVTEQRRR SKINERFQRL 60 RDLIPNSDQK RDTASFLLEV IDYVQYLQGE MQKYEGPYQP WSAEPAKLMP WRNSHWRTQS 120 IAPQPLGNGV GAGYAPKFND TSQSTLLGHP HEFSEPDALA DPTEMKEELL GVAFKRRFLC 180 NSKTCVNQTG SELGLQARSC FC*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007045739.2	4e-54	PREDICTED: transcription factor BIM2
Refseq	XP_019164681.1	4e-54	PREDICTED: transcription factor BIM2 isoform X1
Refseq	XP_019164682.1	4e-54	PREDICTED: transcription factor BIM2 isoform X1
Refseq	XP_019164683.1	4e-54	PREDICTED: transcription factor BIM2 isoform X1
Refseq	XP_019164684.1	4e-54	PREDICTED: transcription factor BIM2 isoform X1
Refseq	XP_019164685.1	4e-54	PREDICTED: transcription factor BIM2 isoform X1
Refseq	XP_019164686.1	4e-54	PREDICTED: transcription factor BIM2 isoform X2
Swissprot	Q9CAA4	2e-54	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A061E9E2	7e-53	A0A061E9E2_THECC; BES1-interacting Myc-like protein 2
STRING	EOY01571	1e-53	(Theobroma cacao)
STRING	Bostr.10273s0468.1.p	1e-53	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	2e-51	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Kaladp0489s0004.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]