PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0430s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | FAR1 | ||||||||
Protein Properties | Length: 129aa MW: 14799.8 Da PI: 8.7376 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.7 | 5.3e-20 | 46 | 124 | 4 | 84 |
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 n+YA + GF +rk+ +s+rnge++++++vC+keg+++ ++ +++++r rtgC+ak+++ ++ +gkw+v+k++ e Kaladp0430s0001.1.p 46 NHYAVRRGFGIRKHFLARSRRNGEVIRKEYVCNKEGFKNVVPQT-IDHKKRRRDARTGCQAKMEIGQK-SGKWVVDKFNDE 124 79**************************************9999.89999999*************99.9*******9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.6E-18 | 46 | 123 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MEDALIQMDS GNTDNTIVRD ASCEKVVDSL LGKYFDTMEE AYDANNHYAV RRGFGIRKHF 60 LARSRRNGEV IRKEYVCNKE GFKNVVPQTI DHKKRRRDAR TGCQAKMEIG QKSGKWVVDK 120 FNDEVFCC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023754910.1 | 1e-22 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_023756111.1 | 1e-22 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2U1KKA1 | 6e-21 | A0A2U1KKA1_ARTAN; FAR1 DNA binding domain, FHY3/FAR1 family |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 5e-16 | FAR1-related sequence 12 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0430s0001.1.p |