PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0403s0001.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 239aa    MW: 26767.3 Da    PI: 5.4014
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0403s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-16105155255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp     k  r++lg+f++  +Aaka++ a+ k++g
  Kaladp0403s0001.1.p 105 HYRGVRRRP-WGKFAAEIRDP---ArKGSRVWLGTFDSDVDAAKAYDFAAFKMRG 155
                          8********.**********8...4445**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.83E-28104163No hitNo description
Gene3DG3DSA:3.30.730.101.5E-30104164IPR001471AP2/ERF domain
PfamPF008471.1E-11105155IPR001471AP2/ERF domain
PROSITE profilePS5103224.039105163IPR001471AP2/ERF domain
SMARTSM003802.9E-36105169IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22105164IPR016177DNA-binding domain
PRINTSPR003674.3E-13106117IPR001471AP2/ERF domain
PRINTSPR003674.3E-13145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDETSTLDLI RSHLLADFAS TESFISSLHS DLLLDSTPST TTSPYDAPFW SLFPVKREMT  60
DTDHNYNLLE FIKPEFFDIA TSQREDTGKT SSSEETSSPP FDRKHYRGVR RRPWGKFAAE  120
IRDPARKGSR VWLGTFDSDV DAAKAYDFAA FKMRGSKAIL NFPLQAGKEA GPPENSGRRR  180
RRRRDSRAET TATESAAGSS SSCFNNNDDD NNNEPWTPSS HNLTFTTTTT TEDQMLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-29104165465ATERF1
3gcc_A2e-29104165465ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177183RRRRRRR
2177184RRRRRRRD
3178186RRRRRRDSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905462.13e-52ethylene-responsive transcription factor ERF106
TrEMBLA0A2P5BQJ32e-54A0A2P5BQJ3_PARAD; AP2/ERF transcription factor
STRINGevm.model.supercontig_13.2531e-52(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-28ERF family protein